View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9316_low_23 (Length: 220)
Name: NF9316_low_23
Description: NF9316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9316_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 33412092 - 33411905
Alignment:
| Q |
18 |
agaagagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaa |
117 |
Q |
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| T |
33412092 |
agaagagacaaaacaaatgctaaggatgattccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaa |
33411993 |
T |
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| Q |
118 |
ggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgtcacattgtctttgcttgtctgtg |
205 |
Q |
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| T |
33411992 |
ggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgtcacattgtccttgcttgtctgtg |
33411905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 15729647 - 15729807
Alignment:
| Q |
22 |
gagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaa |
121 |
Q |
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| T |
15729647 |
gagaccaaacaaatgataagaatgatcccaatcatggctactacattaattcctagtacaatgattgctcaaataaatacattgtttgtgaaacaaggaa |
15729746 |
T |
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| Q |
122 |
caacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgt |
182 |
Q |
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| T |
15729747 |
caacacttgatagaggcattgggagtttcaaaattccaccagcaagtttaggtacatttgt |
15729807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 15766269 - 15766392
Alignment:
| Q |
57 |
ggttgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaatt |
156 |
Q |
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| T |
15766269 |
ggttgcaacatttattccaagtgcaatgatagctcaaataaataccctttttgtaaaacaaggaactactcttaacagatccattggcaacttccatatt |
15766368 |
T |
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| Q |
157 |
ccaccagcaagtttagctgcattt |
180 |
Q |
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| T |
15766369 |
ccaccatcaagtttagctgcattt |
15766392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 15737250 - 15737410
Alignment:
| Q |
22 |
gagacaaaacaaatgctaaggatgataccaatcttggttgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaa |
121 |
Q |
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| T |
15737250 |
gagaccaaacaaatgctaagaatgatcccaattttagctacaacattaattcctagtacaatggttgctcaaataaatacactctttgtgaagcaaggaa |
15737349 |
T |
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| Q |
122 |
caacacttgacagacacattggaagcttcaaaattccaccagcaagtttagctgcatttgt |
182 |
Q |
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| T |
15737350 |
caacacttgatagagacattgggagtttccaaattccaccagcaagtttaggtacatttgt |
15737410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 15755400 - 15755521
Alignment:
| Q |
57 |
ggttgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaatt |
156 |
Q |
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|||||| |||||| |||||||| ||||||| |||||| |||| |||||||| ||||||||||||| || ||| ||||| |||||| | ||| ||| || |
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| T |
15755400 |
ggttgccacatttattccaagtgcaatgattgctcaaataaatacccttttcataaaacaaggaactactcttaacagatccattggcaacttaaaagtt |
15755499 |
T |
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| Q |
157 |
ccaccagcaagtttagctgcat |
178 |
Q |
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| T |
15755500 |
cctccagcaagtttaactgcat |
15755521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 15779384 - 15779498
Alignment:
| Q |
57 |
ggttgctacatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaatt |
156 |
Q |
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||||||||||||| |||| ||| ||||||| ||||| |||| ||| | |||||||| |||||| | ||||| |||||| |||||| | |||| | ||| |
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| T |
15779384 |
ggttgctacatttattcctagtgcaatgattgctcagataaataccttgtttgtaaagcaaggatctacactcgacagagccattggcaacttcgatatt |
15779483 |
T |
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| Q |
157 |
ccaccagcaagttta |
171 |
Q |
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|| ||| |||||||| |
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| T |
15779484 |
cctccatcaagttta |
15779498 |
T |
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