View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9316_low_24 (Length: 212)
Name: NF9316_low_24
Description: NF9316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9316_low_24 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 47544126 - 47544305
Alignment:
| Q |
19 |
atagaaatcctgtgaaacatctttgatcagcttctttttgggcgtagtcgtatctgcataataaaaagcacatgtgattcgtttaagttcagcgcgcaat |
118 |
Q |
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| T |
47544126 |
atagaaatcctgtgaaacatctttgatcagcttctttttgggcgtagtcgtatctgcataataaaaagcacatgtgattcgtttaagttcagtgcgcaat |
47544225 |
T |
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| Q |
119 |
aaaatcaaatttcaacacttgtgagataagtt-aaagttacaggatataacatgcttacataaatcaaatggcttctctg |
197 |
Q |
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| T |
47544226 |
aaaatcaaatttcaacacttgtgagataagttaaaagttgcaggatataacatgcttacataaatcaaatggcttctctg |
47544305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 42699687 - 42699855
Alignment:
| Q |
19 |
atagaaatcctgtgaaacatctttgatcagcttctttttgggcgtagtcgtatctgcataataaaaagcacatgtgattcgtttaagttcagcgcgcaat |
118 |
Q |
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| T |
42699687 |
atagaaatcctgtgaaacatctttgattagcttcttcttgggcgtaatagtatctgcataataaaaggcgcatgtgattcgtttaagttcagtgcgcaat |
42699786 |
T |
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| Q |
119 |
aaaatcaaatttcaacacttgtgagataagttaaagttacaggatataacatgcttacataaatcaaatggcttctctg |
197 |
Q |
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| T |
42699787 |
aaaatca---------acttgtgagataagttcaaattacaggatataacaagcttaca-aaatcaaatggcttctctg |
42699855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 905 - 831
Alignment:
| Q |
19 |
atagaaatcctgtgaaacatctttgatcagcttctttttgggcgtagtcgtatctgcataataaaaagcacatgtgat |
96 |
Q |
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| T |
905 |
atagaaatcctgggaaatatctttgaccagcttctta---ggtggagtagtatctgcattataaaaagcacatgtgat |
831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 8018721 - 8018795
Alignment:
| Q |
19 |
atagaaatcctgtgaaacatctttgatcagcttctttttgggcgtagtcgtatctgcataataaaaagcacatgtgat |
96 |
Q |
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|||||||||||| |||| |||||||| ||||||||| || | ||| |||||||||| |||||||||||||||||| |
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| T |
8018721 |
atagaaatcctgggaaatatctttgaccagcttctta---ggtggagtagtatctgcattataaaaagcacatgtgat |
8018795 |
T |
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