View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9316_low_4 (Length: 629)
Name: NF9316_low_4
Description: NF9316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9316_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 174 - 439
Target Start/End: Original strand, 8445876 - 8446141
Alignment:
| Q |
174 |
ggccttctaattattattatccaagttaagtgattttgttactaatttatacttgttgctatcataatcttgaatgaaaaccctggaactccactagtgt |
273 |
Q |
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| T |
8445876 |
ggccttctaattattattatccaagttaagtgattt-gttactaatttatacttgttgctatcataatcttgaatgaaaaccctggaactccactagtgt |
8445974 |
T |
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| Q |
274 |
atgctatggtcccaagtttgaataaggcatgggcaggggcgatgtcgcttttgggagacagagtattcc-aatccacaatagaaacaagatcaaagggag |
372 |
Q |
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| T |
8445975 |
atgctatggtcccaagtttgaataaagcatgggcaggggtgatgtcgcttttgggagacagagtattccaaatccacaatagaaacaagatcaaagggag |
8446074 |
T |
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| Q |
373 |
acggggaagaaaacagttgagggattacaaagggaaagagttagggacaaagattagaacaatagag |
439 |
Q |
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| T |
8446075 |
acggggaagaaaacagttgagggattacaaagggaaagagttagggacaaagattagaacaatagag |
8446141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 397 - 612
Target Start/End: Original strand, 8446166 - 8446386
Alignment:
| Q |
397 |
ttacaaagggaaagagttagggacaaagattagaacaatagagcata-----------ccctgtaatttacaaaaattagatactttagtctcttatgtt |
485 |
Q |
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| T |
8446166 |
ttacaaagggaaagagttagggacaa-gattagaacaatagagaatagaggtgaagatccctgtaatttacaaaaattagatactttagtctcttatgtt |
8446264 |
T |
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| Q |
486 |
cgtacccctagaaatccactttagattatattatattagtttttatgccaaaggaatagctagtgtgccataatttagcttcctagatcactagaggcca |
585 |
Q |
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| T |
8446265 |
cgtacccctagaaatccactttagattagattatattagtttttatgccaaaggaatagctagtgtgccataatttagcttcctagatcactggag---- |
8446360 |
T |
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| Q |
586 |
agtgacatttttcaagataatcaaaat |
612 |
Q |
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| T |
8446361 |
-gtgacatttttcaagataatcaaaat |
8446386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 8445814 - 8445874
Alignment:
| Q |
12 |
gcagcacagactgaacctccctataatatttggcgctctaagcctactaaagcacacacaa |
72 |
Q |
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| T |
8445814 |
gcagcacagactgaacctccctataatatttggcgctctaagcctaccaaagcacacacaa |
8445874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 43061967 - 43062010
Alignment:
| Q |
147 |
tttagattttggtattgttttgtgtttggccttctaattattat |
190 |
Q |
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| T |
43061967 |
tttagattttggtattgttttgtggttggtcttctaattattat |
43062010 |
T |
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