View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9317_low_10 (Length: 323)
Name: NF9317_low_10
Description: NF9317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9317_low_10 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 24278143 - 24277847
Alignment:
| Q |
18 |
ctacttttcaaaaaagaaacaatgaatggtatcaaacatgtgcaccacaccgaagatggataagagaagactacatggttcaaacatggaagaatatttt |
117 |
Q |
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| T |
24278143 |
ctacttttcaaaaaagaaacaatggatggtatcaaacatgtgcaccacaccgaagatggataagagaagactacatggttcaaacatggaagaatatttt |
24278044 |
T |
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| Q |
118 |
attgaaagaaatatcttgaatgaatgaat----agtaatgtagccacatgtagggtcggtcacaataaatcaatatagagtcgaaaaatgaaaggcatat |
213 |
Q |
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| T |
24278043 |
attgaaataaatatcttgaatgaatgaatgaatagtaatgtagccacatgtagggtcggtcacaataaatcaatatagagttgaaaaatgaaaggcatat |
24277944 |
T |
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| Q |
214 |
tagatgtactgttgggttgatattccatgtcaataaccaactacctcaactactagctaacaaacaattatactaattagtaaacaattcaacccaacac |
313 |
Q |
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| T |
24277943 |
tagatgtactgttgggttgatattccatgtcaataaccaactacctcaactactagctaacaaacaatta-------tagtaaacaattcaacccaacac |
24277851 |
T |
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Target: scaffold0003 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 325671 - 325484
Alignment:
| Q |
18 |
ctacttttcaaaaaagaaacaatgaatggtatcaaacatgtgcaccacaccgaagatggataagagaagactacatggttcaaacatggaagaatatttt |
117 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
325671 |
ctacttttcaaaaaagaaacaatggatggtatcaaacatgtgcaccacaccgaagatggataaaagaagactacatgattcaaacatggaagaatatttt |
325572 |
T |
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| Q |
118 |
attgaaagaaatatcttgaatgaatgaatagtaatgtagccacatgtagggtcggtcacaataaatcaatatagagtcgaaaaatgaa |
205 |
Q |
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||| ||| ||||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
325571 |
attaaaataaatatcttgaatgaatgaatagtaatacaaccaagtgtagggtcggttacaataaatcaatatagagttgaaaaatgaa |
325484 |
T |
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