View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9317_low_11 (Length: 288)
Name: NF9317_low_11
Description: NF9317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9317_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 272
Target Start/End: Original strand, 43842707 - 43842973
Alignment:
| Q |
6 |
aggagcagagacaatcactaaaatttagcaaaatcaagcacaagagattaattgtgaaacacatggaagaaactacggagagattatcaactaagaaaga |
105 |
Q |
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| T |
43842707 |
aggaacagaaacaatcactaaaatttagcaaaatcaagcacaagagattaattgtgaaacacatggaagaaactacggagagattatcaactaagaaaga |
43842806 |
T |
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| Q |
106 |
agagaaaacaatggctttctatgtttaccatccatgctattgtcttgaagaaattttcaagacttttttgaggtgttttggtattgagtccacccaaacc |
205 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43842807 |
agagaaaacaatgactttctatgtttaccatccatgctattgtcttgaagaaattttcaagacttttttgaggtgttttggtattgagtccacgcaaacc |
43842906 |
T |
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| Q |
206 |
aaagaagaagaagattcatcaacatcactactcaaacctcatgcatgtgcatgtgcatctgattcta |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43842907 |
aaagaagaagaagattcatcaacatcactactcaaacctcatgcatgtgcatgtgcatctgattcta |
43842973 |
T |
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