View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9317_low_16 (Length: 241)
Name: NF9317_low_16
Description: NF9317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9317_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 43843123 - 43843215
Alignment:
| Q |
131 |
ccaaccaaagtacgaacaccatttaatttcctcaaacaattgagtatattgtgtgcagaatctaagttcaatgggaaggggtggtcctcgaag |
223 |
Q |
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| T |
43843123 |
ccaaccaaagtacgaacaccatttaatttcctcaaacaattgagtatattgtgtgcagaatctaagttcaatgggaaggggtggtcctcgaag |
43843215 |
T |
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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 43842994 - 43843082
Alignment:
| Q |
1 |
tattattcttcaagcagcaataagaaaagctcacaagaagaaggggttgcagatccaccaccatccacatctactcgaaccattgtatg |
89 |
Q |
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| T |
43842994 |
tattattcttcaagcagcaataagaaaagctcacaagaagaaggggttgcagatccaccaccatccacatctactcaaaccattgtatg |
43843082 |
T |
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