View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9317_low_21 (Length: 219)

Name: NF9317_low_21
Description: NF9317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9317_low_21
NF9317_low_21
[»] chr4 (7 HSPs)
chr4 (87-201)||(36936034-36936148)
chr4 (114-202)||(36961217-36961305)
chr4 (111-201)||(35097655-35097745)
chr4 (141-201)||(35072937-35072997)
chr4 (141-201)||(35106863-35106923)
chr4 (111-201)||(36940732-36940821)
chr4 (141-201)||(36296710-36296770)
[»] chr6 (2 HSPs)
chr6 (141-201)||(24014436-24014496)
chr6 (141-201)||(24040993-24041053)
[»] chr1 (1 HSPs)
chr1 (111-201)||(3123046-3123136)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 36936148 - 36936034
Alignment:
Q  87 aaattgaagagaagatgtcactgagagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttc 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  36936148 aaattgaagagaagatgtcactgagagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagtagatgtgttcaaggcggatcttc 36936049  T
Q  187 caggaatgaagaagg 201  Q
    |||||||||||||||    
T  36936048 caggaatgaagaagg 36936034  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 36961217 - 36961305
Alignment:
Q  114 aattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggt 202  Q
    ||||| ||||||||||||||||||||||||||||||||||| | |||||| || |||||||||||||||||||| ||||||||||||||    
T  36961217 aattcagcattcctgagcacacgtgtggattggaaggagactcgagaagcgcacgtgttcaaggcggatcttccgggaatgaagaaggt 36961305  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 35097655 - 35097745
Alignment:
Q  111 gagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaagg 201  Q
    ||||||||||||||    |||||||  |||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||||||||    
T  35097655 gagaattctgcatttgcaagcacacaagtggattggaaggagaccccagaagcacatgtgttcgaggctgatcttcctggactgaagaagg 35097745  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 35072997 - 35072937
Alignment:
Q  141 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaagg 201  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| ||| |||||||||    
T  35072997 gattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaagg 35072937  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 35106863 - 35106923
Alignment:
Q  141 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaagg 201  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| ||| |||||||||    
T  35106863 gattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaagg 35106923  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 36940821 - 36940732
Alignment:
Q  111 gagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaagg 201  Q
    |||| |||||||||  ||||||||| ||||||||||||| |||| || | |||||| |||||||| || ||| ||||||||||||||||||    
T  36940821 gagagttctgcatttgtgagcacacatgtggattggaag-agactcctggagcacacgtgttcaatgctgattttccaggaatgaagaagg 36940732  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 36296770 - 36296710
Alignment:
Q  141 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaagg 201  Q
    |||||||||||||||||||||||||| ||||| || || |||||||| ||| |||||||||    
T  36296770 gattggaaggagaccccagaagcacacgtgtttaaagctgatcttcctggactgaagaagg 36296710  T

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Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 24014496 - 24014436
Alignment:
Q  141 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaagg 201  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  24014496 gattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaagg 24014436  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 24041053 - 24040993
Alignment:
Q  141 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaagg 201  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  24041053 gattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaagg 24040993  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 3123046 - 3123136
Alignment:
Q  111 gagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaagg 201  Q
    |||||||| |||||  |||||||| | ||||| || ||||| || | |||||||||||||||||| || |||||||||||  |||||||||    
T  3123046 gagaattccgcatttgtgagcacaagagtggactgaaaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaagg 3123136  T

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