View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9317_low_23 (Length: 212)
Name: NF9317_low_23
Description: NF9317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9317_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 738115 - 737939
Alignment:
| Q |
23 |
attacaccttattaaatttgtgtgaagtaaattcattttacctataatcaaaatatgagagtttctgttttgggtttgtttattaatttggggttgttct |
122 |
Q |
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| T |
738115 |
attacaccttattaaatttgtgtgaaataaattcattttacctataatcaaaatatgagagtttcagttttgggtttgtttattaatttggggttgttct |
738016 |
T |
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| Q |
123 |
ttgatttgggtgtcacttttgaagattgactatagaccgttggctaaaaatgactatgaatgtttactgttttgatg |
199 |
Q |
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| T |
738015 |
ttgatttgggtgtcactcttgaagattgactatagaccgttggctagaaatgactatgaatgtttactgttttgatg |
737939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 37574247 - 37574320
Alignment:
| Q |
37 |
aatttgtgtgaagtaaattcattttacctataatcaaaatatgagagtttctgttttgggtttgtttattaatttg |
112 |
Q |
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| T |
37574247 |
aatttgtgtgaagttaattcattttacttttaataaaaatat--gagtttcagttttaggttagtttattaatttg |
37574320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 10061411 - 10061235
Alignment:
| Q |
23 |
attacaccttattaaatttgtgtgaagtaaattcattttacctataatcaaaatatgagagtttctgttttgggtttgtttattaatttggggttgttct |
122 |
Q |
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| T |
10061411 |
attacacttaattaaatttgtgtgaagttaattcattttacttataatcaaaattgaagagtttatgttttgggtttgtttattaatttagggttgttct |
10061312 |
T |
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| Q |
123 |
ttgatttgggtgtcacttttgaagattgactatagaccgttggctaaaaatgactatgaatgtttactgttttgatg |
199 |
Q |
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| T |
10061311 |
ttaatctgggtgtcactcttgaagattgactatagaccgttggttagaaatgatcatggatgtttactgttttgatg |
10061235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 10060671 - 10060510
Alignment:
| Q |
33 |
attaaatttgtgtgaagtaaattcattttacctataatcaaaatatgagagtttctgttttgggtttgtttattaatttggggttgttctttgatttggg |
132 |
Q |
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|||||||||||||||||| ||||||| |||| ||||||||||||| ||||||| |||||||||||||| ||||||||| | ||| |||||| || |||| |
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| T |
10060671 |
attaaatttgtgtgaagttaattcatcttacttataatcaaaatagaagagtttatgttttgggtttgtatattaatttagagttcttctttaatctggg |
10060572 |
T |
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| Q |
133 |
tgtcacttttgaagattgactatagaccgttggctaaaaatgactatgaatgtttactgtttt |
195 |
Q |
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| T |
10060571 |
tgtcactcttgaagattgactatagaccattgg-ttagaataaccatgaatgtttactttttt |
10060510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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