View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9317_low_3 (Length: 593)
Name: NF9317_low_3
Description: NF9317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9317_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Original strand, 32488584 - 32489153
Alignment:
| Q |
18 |
cccagcttgcctcataagccaaacaggaggtctttccacatctaatccacgaactgcattgagcaaaagaggttctgtggcattatttgttttaggttca |
117 |
Q |
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| T |
32488584 |
cccagcttgcctcataagccaaacaggaggtctttcgacatctaatccacgaactgcattgagcaaaagaggttctgtggcattatttgttttaggttca |
32488683 |
T |
|
| Q |
118 |
gcaacagctcctacacataatttcccaaaattcagataatggaccagattaaatttttnnnnnnnnggtttttagtgaaattgaacaataaatgttaatg |
217 |
Q |
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| T |
32488684 |
gcaacagctcctacacataatttcccaaaattcagataatgggccagattaaattttttaaaaaaaggtttttagtgaaattgaacaataaaagttaatg |
32488783 |
T |
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| Q |
218 |
atagaagattcaaaaccctaataaagggaagtaatacctggaagagaacattgaatagatttgaatggggaaaagggtgtggagtggtgttgttttctgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32488784 |
atagaagattcaaaaccctaataaagggaagtaatacctggaagagaacattgaatggatttgaatggggaaaagggtgtggagtggtgttgttttctgg |
32488883 |
T |
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| Q |
318 |
gtaaaatggaagcgaaggaagtgctaactacgccgcaaaacatgtttgatttcaattgaagtgttttgtttcagacagacacagattttgcctttggatt |
417 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32488884 |
gtaaaatggaagtgaaggaagtgctaactacgccgcaaaacatgtttgatttcaattgaagtgttttgtttcagacagacacagattttgcctttggatt |
32488983 |
T |
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| Q |
418 |
cgcaatgtttgagtttgattgagttgagtttcagctatgttacggtacgggcgaagtatgggaaggataagggaatctaacacccaatcatgatctagta |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32488984 |
cgcaatgtttgagtttgattgagttgagtttcagctatgttacggtacgggcgaagtatgggaaggataagggaatctaacacccaatcatgatctagta |
32489083 |
T |
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| Q |
518 |
gtccatactttgtgggtactcacttatgccatgtcatcgcaatagtgtggaattcttgggcctatgctac |
587 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32489084 |
gtccatactttgtgggtactcacttatgccatgtcatcgcaatagtgtggaattcttgggactatgctac |
32489153 |
T |
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