View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9317_low_6 (Length: 385)
Name: NF9317_low_6
Description: NF9317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9317_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 48171926 - 48171566
Alignment:
| Q |
19 |
gttcctgcacctcttccacctcccaattgtacctcccaaaagagtgttgccactgccgatgaaagggagagcgaagatgataatgacagccatagttctg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
48171926 |
gttcctgcacctcttccacctcccaattgtacctcccaaaagagtgttgccactgccgatgaaagtgagagcgaagatgataatgacagccatagttccg |
48171827 |
T |
|
| Q |
119 |
atgaagagcgttttgttcatgaggataaaaagtctattacagcaactagcgcaaaacacaaagaatatgatgatgtcttggatactgaaggtgattatta |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48171826 |
atgaagagcgttctgttcatgaggataaaaagtctattacagcaactagcgcaaaacaccaagaatatgatgatgtctcggatactgaaggtgattatta |
48171727 |
T |
|
| Q |
219 |
tgataatgaaaaccaacatgattatagttcacaagatgctaaagaaacaaaggagttctactccaagtcaagctgcaaaagcagcaccaaatcaaggaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48171726 |
tgataatgaaaaccaacatgattatagttcacaagatgctaaagaaacaaaggagttctactccaagtcaagctgcaaaagcagcaccaaatcaaggaag |
48171627 |
T |
|
| Q |
319 |
gggaccgtttcttctggccgaaggaacaactccagttcagattcagaaaatgaccacgaaa |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48171626 |
gggaccgtttcttctggccgaaggaacaactccagttcagattcagaaaatgaccacgaaa |
48171566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University