View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9317_low_9 (Length: 325)

Name: NF9317_low_9
Description: NF9317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9317_low_9
NF9317_low_9
[»] chr4 (10 HSPs)
chr4 (13-318)||(35097701-35098006)
chr4 (13-272)||(35098036-35098295)
chr4 (15-318)||(35072678-35072981)
chr4 (14-318)||(35106879-35107183)
chr4 (13-318)||(36296449-36296754)
chr4 (20-314)||(36940478-36940772)
chr4 (22-266)||(36961300-36961545)
chr4 (19-134)||(36935859-36935975)
chr4 (214-318)||(36935974-36936078)
chr4 (96-142)||(36953720-36953766)
[»] chr6 (2 HSPs)
chr6 (15-318)||(24014177-24014480)
chr6 (14-318)||(24040733-24041037)
[»] chr1 (1 HSPs)
chr1 (185-317)||(3123093-3123225)
[»] chr5 (2 HSPs)
chr5 (21-164)||(34919131-34919274)
chr5 (195-304)||(26578990-26579099)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 35098006 - 35097701
Alignment:
Q  13 aagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098006 aagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcac 35097907  T
Q  113 ttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35097906 ttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctca 35097807  T
Q  213 acattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtg 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35097806 acattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagcctcgaacacatgtg 35097707  T
Q  313 cttctg 318  Q
    ||||||    
T  35097706 cttctg 35097701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 35098295 - 35098036
Alignment:
Q  13 aagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098295 aagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcac 35098196  T
Q  113 ttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098195 ttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctca 35098096  T
Q  213 acattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttct 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098095 acattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttct 35098036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 318
Target Start/End: Original strand, 35072678 - 35072981
Alignment:
Q  15 gttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt 114  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35072678 gttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt 35072777  T
Q  115 ggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaac 214  Q
    | ||||||||||||||||| ||  |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||     
T  35072778 gatccattttcgcattctctggttatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaat 35072877  T
Q  215 attcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgct 314  Q
     |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  35072878 gttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagct 35072977  T
Q  315 tctg 318  Q
    ||||    
T  35072978 tctg 35072981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 35107183 - 35106879
Alignment:
Q  14 agttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcact 113  Q
    |||| ||||||||||||||||||  || || |||||||||||||||||||| || || ||||| |||| |||||||||||||||||| ||||||||||||    
T  35107183 agtttaaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccattctccatagcagctttcact 35107084  T
Q  114 tggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaa 213  Q
    || ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  35107083 tgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaa 35106984  T
Q  214 cattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgc 313  Q
      |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  35106983 agttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagc 35106884  T
Q  314 ttctg 318  Q
    |||||    
T  35106883 ttctg 35106879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 36296449 - 36296754
Alignment:
Q  13 aagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcac 112  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| |  ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36296449 aagttcaaccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcac 36296548  T
Q  113 ttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctca 212  Q
     || ||||| || ||||| || |||||||||||||||||||| || || ||||||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  36296549 ctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccattggttgttcttgtcttctttctca 36296648  T
Q  213 acattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtg 312  Q
    || ||||||||||| || ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  36296649 acgttcctctctccactaatctgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtg 36296748  T
Q  313 cttctg 318  Q
    ||||||    
T  36296749 cttctg 36296754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 36940478 - 36940772
Alignment:
Q  20 accagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtcc 119  Q
    ||||||||| |||||||  ||||| ||| | ||||||||||||| ||| || ||||| ||||||||||  |||||||||||||||||||||| ||| |||    
T  36940478 accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc 36940577  T
Q  120 attttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattcc 219  Q
    ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  | |    
T  36940578 attttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcttctttctcaacgcttc 36940677  T
Q  220 tctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgct 314  Q
    | | ||| ||||||||||||||||||||| ||||||| || || ||| |||| |||||||||| ||| |||| |||||| |||||||| ||||||    
T  36940678 tttttccacttatctgaagaaccctatcatcttcaatctctactttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgct 36940772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 36961545 - 36961300
Alignment:
Q  22 cagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgca-gctttcacttggtcca 120  Q
    ||||||| ||||||| ||||||  |||| || || |  ||||| || |||| ||| |||||||||||||||||||||  ||   || ||||| || ||||    
T  36961545 cagagatatcaatggtcttaactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacctgatcca 36961446  T
Q  121 ttttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattcct 220  Q
    | || |||||||| | |||||| ||| ||||||||||||||||||||||| ||||||| | |||||||| || |||||||||||||||||||||  | ||    
T  36961445 tcttagcattctctgccaatctaaacttcctcatgaatttcccactgctaagctccacgcaatgccattcattgttcttatcttctttctcaacgcttct 36961346  T
Q  221 ctctccgcttatctgaagaaccctatcaccttcaatttcaaccttc 266  Q
    ||||||||| |||||||||||||||||| ||||||| || ||||||    
T  36961345 ctctccgctgatctgaagaaccctatcaacttcaatctctaccttc 36961300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 36935859 - 36935975
Alignment:
Q  19 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctcc-attgcagctttcacttggt 117  Q
    |||||||||| ||||||| ||| || ||||||||||| | |||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||| |    
T  36935859 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttgat 36935958  T
Q  118 ccattttcgcattctca 134  Q
    ||||||| |||||||||    
T  36935959 ccattttagcattctca 36935975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 214 - 318
Target Start/End: Original strand, 36935974 - 36936078
Alignment:
Q  214 cattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgc 313  Q
    |||| |||||||||||||||||||||||| ||||| ||||||| || || |||||||| |||||||||| ||| |||||||| ||||||||||||| | |    
T  36935974 catttctctctccgcttatctgaagaaccatatcatcttcaatctctactttcacttcctccttcttcattcctggaagatccgccttgaacacatctac 36936073  T
Q  314 ttctg 318  Q
    |||||    
T  36936074 ttctg 36936078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 36953720 - 36953766
Alignment:
Q  96 tccattgcagctttcacttggtccattttcgcattctcaggcaatct 142  Q
    |||||||||||||||||||| ||| |||| ||||| |||||||||||    
T  36953720 tccattgcagctttcacttgatccgttttagcattgtcaggcaatct 36953766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 318
Target Start/End: Original strand, 24014177 - 24014480
Alignment:
Q  15 gttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt 114  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24014177 gttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt 24014276  T
Q  115 ggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaac 214  Q
    | |||||||||||||| || ||||| ||||| ||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24014277 gatccattttcgcattttcgggcaacctgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaac 24014376  T
Q  215 attcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgct 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24014377 attcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgct 24014476  T
Q  315 tctg 318  Q
    ||||    
T  24014477 tctg 24014480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 24040733 - 24041037
Alignment:
Q  14 agttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcact 113  Q
    |||| |||||||||| ||||||| ||| || | ||||||||| |  ||||| || || ||||| |||||||||| |||||||||||||||||||||||||    
T  24040733 agtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcact 24040832  T
Q  114 tggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaa 213  Q
    || ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  24040833 tgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaa 24040932  T
Q  214 cattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgc 313  Q
    | |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040933 cgttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgc 24041032  T
Q  314 ttctg 318  Q
    |||||    
T  24041033 ttctg 24041037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 317
Target Start/End: Complemental strand, 3123225 - 3123093
Alignment:
Q  185 ccattgatcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagt 284  Q
    |||| |||||||||| ||||||||||||||  |||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||      
T  3123225 ccatcgatcgttcttgtcttctttctcaacggtcctttctccgcttatctgaagaaccttatcatcttcaatttcaaccttcacctcttccttcttcaac 3123126  T
Q  285 ccaggaagatcagccttgaacacatgtgcttct 317  Q
    || ||||||||||| ||||||||||||||||||    
T  3123125 cctggaagatcagctttgaacacatgtgcttct 3123093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 34919274 - 34919131
Alignment:
Q  21 ccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtcca 120  Q
    ||||| |||||||| |||||||| |||  ||||||    ||||| || |||||||||||||| ||||| |||||||||||  ||||||| || || ||||    
T  34919274 ccagaaatttcaatagacttaacctcactcttcttctcttcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatcca 34919175  T
Q  121 ttttcgcattctcaggcaatctgaacctcctcatgaatttccca 164  Q
    ||||  ||||||||||||| || ||||||||||| || ||||||    
T  34919174 ttttaacattctcaggcaacctaaacctcctcataaacttccca 34919131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 304
Target Start/End: Complemental strand, 26579099 - 26578990
Alignment:
Q  195 ttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagtccaggaagat 294  Q
    ||||| ||||| |||||||  ||||||||||| |||||||  | ||| | |||  ||||||| |||||||||||||| ||||||||||  || |||||||    
T  26579099 ttcttgtcttccttctcaattttcctctctccacttatcttcaaaacacgatcctcttcaatctcaaccttcacttcctccttcttcacgccgggaagat 26579000  T
Q  295 cagccttgaa 304  Q
    | || |||||    
T  26578999 cggctttgaa 26578990  T

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