View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9318_high_2 (Length: 344)
Name: NF9318_high_2
Description: NF9318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9318_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 26981194 - 26981444
Alignment:
| Q |
11 |
cacagatgagtcattaacattagcgtataattatgaatagatctcctaattaatccctcaattatcaagatttaaaaaagaggctcatgaaaaataagaa |
110 |
Q |
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| T |
26981194 |
cacagatgagtcattaacattag--tataattatgaatagatctcctaattaatcgctcaattatcaagatttaaaaaagaggctcatgaaaaataagaa |
26981291 |
T |
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| Q |
111 |
gagagaattaagtaaaagtacaatatacaattgaactgaaatataaattgaaaaatttatcaagaagtaattnnnnnnnnntcttattcctgaatagaaa |
210 |
Q |
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| T |
26981292 |
gagagaattaagtaaaagtacaatatacaattgaactgaaatataaattgaaaaatttatcaaaaagtaattaaaaaataatcttattcctgaatagaaa |
26981391 |
T |
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| Q |
211 |
cagttaactaaattcaagtttttagttgaagactaaaaaggttaaagatttta |
263 |
Q |
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| T |
26981392 |
cagttaactaaattcaagtttttagttgaagactaaaaaggttaaagacttta |
26981444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 26975157 - 26975216
Alignment:
| Q |
263 |
actctttttgaggtaccaattaaagagcgtatctcttgaaatctcttctcaaatcattat |
322 |
Q |
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| T |
26975157 |
actctttttgaggtagaaattaaagagtttagctctagaaatctcttctcaaatcattat |
26975216 |
T |
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