View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9318_high_6 (Length: 210)
Name: NF9318_high_6
Description: NF9318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9318_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 48449666 - 48449846
Alignment:
| Q |
19 |
agacgttccattatgcagaggtcttattctgacagctatctatgttgctccttcaaccgtatacaagccacatctgtgcaaccaaaacttaaggacaacg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48449666 |
agacgttccattatgcagaggtcttattctgacagctatctatgttgctccttcaaccgtatacaagccacatctgtgcaaccaaaacttaaggacaacg |
48449765 |
T |
|
| Q |
119 |
ggtcaatgggaacttctccatttcaattttcaggttccattctcccaaattctttgcgctctttcttatttgaccaccaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48449766 |
ggtcaatgggaacttctccatttcaattttcaggttccattctcccaaattctttgcgctctttcttatttgaccaacaaa |
48449846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University