View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9318_low_1 (Length: 692)

Name: NF9318_low_1
Description: NF9318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9318_low_1
NF9318_low_1
[»] chr2 (12 HSPs)
chr2 (1-676)||(2486068-2486755)
chr2 (100-612)||(2470626-2471135)
chr2 (121-568)||(2478503-2478950)
chr2 (290-648)||(2469560-2469921)
chr2 (121-581)||(2482994-2483454)
chr2 (103-668)||(2473811-2474379)
chr2 (180-246)||(3063339-3063405)
chr2 (493-556)||(2466342-2466405)
chr2 (180-246)||(2462592-2462658)
chr2 (180-246)||(2466640-2466706)
chr2 (103-239)||(2469972-2470108)
chr2 (495-555)||(2462289-2462349)
[»] chr4 (1 HSPs)
chr4 (180-246)||(18015915-18015981)


Alignment Details
Target: chr2 (Bit Score: 607; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 1 - 676
Target Start/End: Complemental strand, 2486755 - 2486068
Alignment:
1 gatgatctaaaatgaacattattttgaaattttaaaacattaaaaactatataattatcaggaactcatttcatacattttcccagatattattaattct 100  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2486755 gatgaactcaaatgaacattattttgaaattttaaaacattaaaaactatataattatcaggaactcatttcatacattttcccagatattattaattct 2486656  T
101 tgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
2486655 tgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgagccaccattatcacatttcactttgcc 2486556  T
201 acatccaacacgtagtgatttttcccaaaccacctgagtataatggtggcattcatgaccatcaatacatgagttagcatagtgattaaagtatggttct 300  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2486555 acatccaacacgtagtgatttttcccaaacaacctgagtataatggtggcattcatgaccatcaatacatgagttagcatagtgattaaagtatggttct 2486456  T
301 tcatccacccacaacttcactgcttccgcgccacttacgtagccggtgctcacggcaatattctcg------------ccataacggccaccactgcctg 388  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||            ||||||||||||||||||||||    
2486455 tcatccacccacaacttcactgcttccgcgccacttatgtagccggtgctcaccgcaatattctcgccaagatactcaccataacggccaccactgcctg 2486356  T
389 aggggatctgtttacaatccttgcgttgattagcatagttctgcgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaatggtggtaat 488  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2486355 aggggatctgtttacaatccttgcgttgattagcatagttctgtgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaatggtggtaat 2486256  T
489 ggctgatcttgctttgttgtgggcgttcacgtagtctgccggtgagtcttgggcatgagcaacgtgactacccataatgagtgttaaacctaacaagcac 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2486255 ggctgatcttgctttgttgtgggcgttcacgtagtctgccggtgagtcttgggcatgagcaacgtgactacccataatgagtgttaaacctaacaagcac 2486156  T
589 aattgagaaaatgaatccattttgctgatttctataaatttctgaatgctaaatggttttgtgggtgtttgatgagaattcttgttgg 676  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
2486155 aattgagagaatgaacccattttgctgatttctataaatttctgaatgctaaatggttttgtgggtgtttgatgagaattgttgttgg 2486068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 100 - 612
Target Start/End: Complemental strand, 2471135 - 2470626
Alignment:
100 ttgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgc 199  Q
    ||||| ||| |||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||  |||||||| |||||||||||| |||||||||    
2471135 ttgatctgagtcacttagtacggtaattgaccagcaatgttaccaggtgggtcataattgcaagtaatgaatgtgcctccattatcacatctcactttgc 2471036  T
200 cacatccaacacgtagtgatttttcccaaaccacctgagtataatggtggcattcatgaccatcaatacatgagttagcatagtgattaaagtatggttc 299  Q
    |||||||||||||| ||||||||||||| | |||||| ||||||||  | ||||||   ||| ||| ||||||||||  |||||||| | ||| ||| ||    
2471035 cacatccaacacgttgtgatttttcccatatcacctgggtataatgaagacattca---ccaccaacacatgagttattatagtgatcatagtgtggctc 2470939  T
300 ttcatccacccacaacttcactgcttccgcgccacttacgtagccggtgctcacggcaatattctcgccataacggccaccactgcctgaggggatctgt 399  Q
     || |||||||| | ||||||||| ||   | ||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
2470938 ctcctccacccaaatcttcactgcatctctgacactcttgtagccggtgctcaccgcaatattctcgccataacggccaccactgcctgaagggatctgt 2470839  T
400 ttacaatccttgcgttgattagcatagttctgcgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaatggtggtaatggctgatcttg 499  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||||  |  | |||||||||||| ||||||||||||    |||||||  |  ||||||    
2470838 ttacaatccttgcgtttattagcatagttctgtgcaaaagcagcaactttttcatcccaaacaatatttggaattttagcactggtaatcacaaatcttg 2470739  T
500 ctttgttgtgggcgttcacgtagtctgccggtgagtcttgggcatgagcaacgtgactacccataatgagtgttaaacctaacaagcacaattgagaaaa 599  Q
    ||   |||||||||||||| |||||||| |||||||||||||     ||||| ||||| |||| ||||||| |||| || || |  |||||| ||||||     
2470738 ctgcattgtgggcgttcacatagtctgctggtgagtcttgggatattgcaacttgactgcccacaatgagtattaatcccaaaacacacaatagagaaag 2470639  T
600 tgaatccattttg 612  Q
    |||| ||||||||    
2470638 tgaacccattttg 2470626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 121 - 568
Target Start/End: Complemental strand, 2478950 - 2478503
Alignment:
121 ggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccacatccaacacgtagtgatt 220  Q
    ||||||||||||| ||||||||| ||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||      
2478950 ggtaattggccaggaatgttacctgggggataataattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgtagtgaac 2478851  T
221 tttcccaaaccacctgagtataatggtggcattcatgaccatcaatacatgagttagcatagtgattaaagtatggttcttcatccacccacaacttcac 320  Q
     |  |||||| ||||| ||| |||| || |||||   |||||||| ||||  ||||  ||||| || ||||| ||||| ||||||| ||||   ||||||    
2478850 ctgaccaaacaacctgggtaaaatgatgacattc---accatcaaaacatttgttaagatagttatcaaagtgtggtttttcatccgcccaacccttcac 2478754  T
321 tgcttccgcgccacttacgtagccggtgctcacggcaatattctcgccataacggccaccactgcctgaggggatctgtttacaatccttgcgttgatta 420  Q
    |||||  | |||||||| |||||| |||||||| |||||||||| ||||||||| |||||||     ||||| ||| |||||||||||||||||||||||    
2478753 tgcttgtgtgccacttatgtagccagtgctcaccgcaatattcttgccataacgaccaccaccattggagggtatcggtttacaatccttgcgttgatta 2478654  T
421 gcatagttctgcgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaatg---gtggtaatggctgatcttgctttgttgtgggcgttca 517  Q
    ||||||||||| ||| | |||||||  ||||| |||||||||||||||||||||||||||   |    ||  || ||||||||||||||||| || ||||    
2478653 gcatagttctgtgcataagcagcaacttcgttgtcccaaacaatgtttggaattttaatgaatgaatcaactgcagatcttgctttgttgtgagcattca 2478554  T
518 cgtagtctgccggtgagtcttgggcatgagcaacgtgactacccataatga 568  Q
    |||||||||| ||||||||||| || || |||||||||||||||| |||||    
2478553 cgtagtctgctggtgagtcttgtgcttgtgcaacgtgactacccacaatga 2478503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 290 - 648
Target Start/End: Complemental strand, 2469921 - 2469560
Alignment:
290 agtatggttcttcatccacccacaacttcactgcttccgcgccacttacgtagccggtgctcacggcaatattctcgccataacggccaccactgcctga 389  Q
    |||| |||| ||||||||||||||||||||| |||||  ||||||| | || ||| |||||| | || |||||||| || |||||||||||||  || ||    
2469921 agtagggtttttcatccacccacaacttcaccgcttctacgccactcatgttgccagtgctctccgcgatattctctccgtaacggccaccaccaccaga 2469822  T
390 ggggatctgtttacaatccttgcgttgattagcatagttctgcgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaatggtggta--- 486  Q
    | ||| | ||| ||||||||||||||||||||||||||| |  ||||| |||||||  | ||| ||||||||||| ||||||||||||| | | |||       
2469821 gtggaccagttgacaatccttgcgttgattagcatagttttttgcaaaagcagcaactttgttgtcccaaacaatatttggaattttaacgtttgtatga 2469722  T
487 atggctgatcttgctttgttgtgggcgttcacgtagtctgccggtgagtcttgggcatgagcaacgtgactacccataatgagtgttaaacctaacaagc 586  Q
    |  ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |     
2469721 accgctgatcttgcattattgtgggcgttcacgtagtctgctggtgagtcttgggcatgtgcaacgtgactacccataatgagtgttaaacctaacagga 2469622  T
587 acaattgagaaaatgaatccattttgctgatttctataaatttctgaatgctaaatggtttt 648  Q
    ||||| ||||||||||| |||||| ||| |||| |||||| ||| |||||||||||||||||    
2469621 acaatagagaaaatgaacccatttagcttatttttataaaattcagaatgctaaatggtttt 2469560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 121 - 581
Target Start/End: Complemental strand, 2483454 - 2482994
Alignment:
121 ggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccacatccaacacgtagtgatt 220  Q
    ||||||||||||| ||| ||||| ||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||      
2483454 ggtaattggccaggaatattacctgggggataataattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgtagtgaac 2483355  T
221 tttcccaaaccacctgagtataatggtggcattcatgaccatcaatacatgagttagcatagtgattaaagtatggttcttcatccacccacaacttcac 320  Q
     |  |||||| ||||| ||| |||| || ||||||   ||||||| ||||  ||||  ||||| || ||||| ||||| ||||||| |||||||||||||    
2483354 ctgaccaaacaacctgggtaaaatgatgacattca---ccatcaaaacatttgttaagatagttatcaaagtgtggtttttcatccgcccacaacttcac 2483258  T
321 tgcttccgcgccacttacgtagccggtgctcacggcaatattctcgccataacggccaccactgcctgaggggatctgtttacaatccttgcgttgatta 420  Q
    |||||     ||||| | ||  ||||||||||| ||||||||||| || ||||||||||||||  | ||||||||| |||||||||||||||||||||||    
2483257 tgcttttcttccactgatgtgtccggtgctcaccgcaatattctcaccgtaacggccaccactatcagaggggatcggtttacaatccttgcgttgatta 2483158  T
421 gcatagttctgcgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaat---ggtggtaatggctgatcttgctttgttgtgggcgttca 517  Q
    ||||||||||| ||| | |||||||| |  |||||||||||||| ||||||||||||||    |    ||  || ||||||||||||||||| || ||||    
2483157 gcatagttctgtgcataagcagcaatttttttatcccaaacaatttttggaattttaataaatgaatcaactgccgatcttgctttgttgtgagccttca 2483058  T
518 cgtagtctgccggtgagtcttgggcatgagcaacgtgactacccataatgagtgttaaacctaa 581  Q
    | |||| ||| || ||||||| ||| || |||||||||||||||| ||||| | |||| |||||    
2483057 catagtttgctggagagtctttggcttgtgcaacgtgactacccacaatgaatattaatcctaa 2482994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 103 - 668
Target Start/End: Complemental strand, 2474379 - 2473811
Alignment:
103 atatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccac 202  Q
    |||||||||| ||||||||||  || ||||  |  ||| |||||||| || |||||||||||||  ||||| || ||||||||||||||||||||| |||    
2474379 atatgaatcaattagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcac 2474280  T
203 atccaacacgtagtgatttttcccaaaccacctgagtataatggtggcattcatgaccatcaatacatgagttagcatagtgattaaagtatggttcttc 302  Q
    |||||| ||||  ||  |||  |||||||||||||||||||||| |||||||   |||| ||| ||||||||||  |   | ||   ||| ||||| |||    
2474279 atccaatacgttttgtgtttctccaaaccacctgagtataatggaggcattc---accaccaacacatgagttactactataatcgtagtttggtttttc 2474183  T
303 atccacccacaacttcactgcttccgcgccacttacgtagccggtgctcacggcaatattctcgccataacggccaccactgcctgaggggatctgttta 402  Q
    ||||||  | ||||||||||||||    ||||| |  | |||| ||||| | || ||||| || || |||||| |||||   || ||| ||| |  || |    
2474182 atccacaaataacttcactgcttcgataccactcatatcgccgctgctctctgcgatattttctccgtaacggtcacca---ccggagtggaccaattga 2474086  T
403 caatccttgcgttgattagcatagttctgcgcaaatgcagcaatatcgttatcccaaacaatgtttggaattttaatggtggt---aatggctgatcttg 499  Q
    ||||||||||||||||||||||| || || ||| | |||||||  | ||| ||||||| ||||||||||||||||||  | ||   ||  || |||||||    
2474085 caatccttgcgttgattagcataattttgtgcataagcagcaactttgttgtcccaaataatgtttggaattttaatatttgtatcaactgccgatcttg 2473986  T
500 ctttgttgtgggcgttcacgtagtctgccggtgagtcttgggcatgagcaacgtgactacc---cataatgagtgttaaacctaacaagcacaa---ttg 593  Q
    ||| ||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |   || ||||||| |||| ||||||| ||| ||   | |    
2473985 cttggttgtgggcattcacgtagtctgctggtgagtcttgggcatgtgcaacgtgactaacatgcacaatgagtattaagcctaacatgcagaatattag 2473886  T
594 agaaaatgaatccattttgctgatttctataaatttctgaatgctaaatggttttgtgggtgtttgatgagaatt 668  Q
    |||||||||| ||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||    
2473885 agaaaatgaacccattttcctgatttctataaatttcagaatgttaaatcgttttgtgggtgtttgatgaaaatt 2473811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 3063339 - 3063405
Alignment:
180 attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg 246  Q
    |||||||||| |||||||| |||||||||||||| |||| |||  |||||| |||||||||||||||    
3063339 attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataatgg 3063405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 493 - 556
Target Start/End: Complemental strand, 2466405 - 2466342
Alignment:
493 gatcttgctttgttgtgggcgttcacgtagtctgccggtgagtcttgggcatgagcaacgtgac 556  Q
    |||||||||| |||||| |||||||| ||||||||  |||||||||||||||| ||||| ||||    
2466405 gatcttgcttcgttgtgagcgttcacatagtctgcttgtgagtcttgggcatgtgcaacatgac 2466342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 2462658 - 2462592
Alignment:
180 attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg 246  Q
    |||||||||| |||||||| |||||||||||||| |||| |||  |||||| ||||| |||||||||    
2462658 attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtataatgg 2462592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 2466706 - 2466640
Alignment:
180 attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg 246  Q
    |||||||||| |||||||| |||||||||||||| |||| |||  |||||| ||||| |||||||||    
2466706 attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtataatgg 2466640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 2470108 - 2469972
Alignment:
103 atatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccac 202  Q
    |||||||||||||||||||||  || ||||  |  ||| || || || || |||||||||||||  ||||| || || |||| ||||||||||||| |||    
2470108 atatgaatcacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttattacatttcactttggcac 2470009  T
203 atccaacacgtagtgatttttcccaaaccacctgagt 239  Q
    ||||||  ||| |||  |||  |||||||||||||||    
2470008 atccaatccgttgtgtgtttctccaaaccacctgagt 2469972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 495 - 555
Target Start/End: Complemental strand, 2462349 - 2462289
Alignment:
495 tcttgctttgttgtgggcgttcacgtagtctgccggtgagtcttgggcatgagcaacgtga 555  Q
    |||||| | ||||||||||||||| |||||||   |||||| ||||||||| |||||||||    
2462349 tcttgcgtcgttgtgggcgttcacatagtctgattgtgagttttgggcatgtgcaacgtga 2462289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 18015981 - 18015915
Alignment:
180 attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg 246  Q
    |||||||||| |||||||| |||||||||||||| |||| |||  |||||| |||||||||||||||    
18015981 attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataatgg 18015915  T

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