View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9318_low_13 (Length: 257)
Name: NF9318_low_13
Description: NF9318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9318_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 37 - 251
Target Start/End: Complemental strand, 37935565 - 37935345
Alignment:
| Q |
37 |
atgcatccgcacataagtcccttaacgaattctcctaataggaggcacataagtaaggggcttagtaagtag---aattttgagatgaggggttt-gttt |
132 |
Q |
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| T |
37935565 |
atgcatccgcacataagtcccttaacgaattctcctaataggaggcacataagtaaggggcttagtaagtagtagaattttgagatgaggggttttgttt |
37935466 |
T |
|
| Q |
133 |
ttaatagcaaataacatgttttattgaataagatgtgataaatataagtg--gtacaagatccatacaatatgatatgatgaagtacaaatagttctcat |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37935465 |
ttaatagcaaataacatgttttattgaataagatgtgataaatataagtgtggtacaagatccatacaatatgatatgatgaagtacaaatagttctcat |
37935366 |
T |
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| Q |
231 |
ccctcccaaaagaataatcta |
251 |
Q |
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||||||||||||||||||||| |
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| T |
37935365 |
ccctcccaaaagaataatcta |
37935345 |
T |
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