View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9318_low_14 (Length: 241)
Name: NF9318_low_14
Description: NF9318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9318_low_14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 31977241 - 31977457
Alignment:
| Q |
22 |
tatcattatcaatgtctcatttatataactttttacatctgctcccacatatatatgttcttacttcc-gatacaattttcttcgagcactacttcaaac |
120 |
Q |
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| T |
31977241 |
tatcattttcaatgtcttatttatataactttttacatctgctcccacatatgtatgttcttacttcctgatacaattttctccgagcactacttcaaac |
31977340 |
T |
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| Q |
121 |
atgtgaaaccnnnnnnngtataggattttcatagtggctttgtctaacgtgcataaatataatggttttgtatcatgcctaagtgtctttaatttttcgc |
220 |
Q |
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| T |
31977341 |
atgtgaaaccttttt---tttgggatttt-atagtggctttgtctaacgttcataaatataatggttttgtatcatgcgtaagtgtctttagtttttcac |
31977436 |
T |
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| Q |
221 |
aattggattaataagtgacat |
241 |
Q |
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||||| || |||||||||||| |
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| T |
31977437 |
aattgaatcaataagtgacat |
31977457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 31915369 - 31915473
Alignment:
| Q |
20 |
attatcattatcaatgtctcat----ttatataactttttacatctgctcccacatatatatgttcttac-ttccgatacaattttcttcgagcactact |
114 |
Q |
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||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||| |||||||||| ||| ||||||||||||| ||| ||||| | |
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| T |
31915369 |
attatcattttcaatgtctcatgcatttatataaatttttacatctgctcccatatatacatgttcttactttctgatacaattttctccgaccactagt |
31915468 |
T |
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| Q |
115 |
tcaaa |
119 |
Q |
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| T |
31915469 |
tcaaa |
31915473 |
T |
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