View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9318_low_17 (Length: 234)
Name: NF9318_low_17
Description: NF9318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9318_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 54565627 - 54565828
Alignment:
| Q |
17 |
agggagagcttcagagacgcgatgctcagccatggaaacttagacgcagaaagagaagcttctagagaaagagaacnnnnnnngttaatcgattaatgca |
116 |
Q |
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| T |
54565627 |
agggagagcttcagagacgcgatgctcagccatggaaacttagacgcagaaagagaagcttctagagaaagagaactttttttgttaatcgattaatgca |
54565726 |
T |
|
| Q |
117 |
aaaagctaaacgagtttagtgtttgttgaatttccacggtttatgtgtgaga--gtgtgtgtgtttgactaacattgactcactcactcactactcaggt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54565727 |
aaaagctaaacgagtttagtgtttgttgaatttccacggtttatgtgtgagagtgtgtgtgtgtttgactaacattgactcactcactcactactcaggt |
54565826 |
T |
|
| Q |
215 |
gt |
216 |
Q |
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|| |
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| T |
54565827 |
gt |
54565828 |
T |
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