View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9318_low_18 (Length: 227)
Name: NF9318_low_18
Description: NF9318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9318_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 31977721 - 31977515
Alignment:
| Q |
1 |
aacatcaaaaatcaatgacacccaaataaacctcatcaataaaggggttaactaacaagttagaaataattaactatccgtaagatagaannnnnnn--- |
97 |
Q |
| |
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|||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31977721 |
aacaccaaaaattaatgacgcccaaataaaactcatcaataaaggggttaactaacaagttagaaataattaactatccggaagatagaatttttttttt |
31977622 |
T |
|
| Q |
98 |
--aatacaataatatatctatataagccaaacacatatttgacacaaaatttcacaagtaattaatattgtatataatttccaagtatgtagcatgaaag |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31977621 |
ttaatacaataatatatctatataagccaaacacatatttgacacacaatttcacaagtaattaatattgtatataatttccaagtatgtagcatgaaag |
31977522 |
T |
|
| Q |
196 |
gcaaaat |
202 |
Q |
| |
|
|| |||| |
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| T |
31977521 |
gccaaat |
31977515 |
T |
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