View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9318_low_2 (Length: 494)
Name: NF9318_low_2
Description: NF9318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9318_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 51 - 492
Target Start/End: Original strand, 48043874 - 48044346
Alignment:
| Q |
51 |
aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcacaaaaaa-tggatgataattgt |
149 |
Q |
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| T |
48043874 |
aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcacaaaaaaatggatgataattgt |
48043973 |
T |
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| Q |
150 |
cctctgtgatacctggccatataaatgatctaaatgaagttcaaattaggtagtagt----------ttcgattacaagtttgtaacaacattgatgtga |
239 |
Q |
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| T |
48043974 |
cctctgtgatacctggccatataaatgatctaaatgaagttcaaattaggtagtagtaggtgctccttccgattacaagtttgtaacaacattgatgtga |
48044073 |
T |
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| Q |
240 |
caatatcgtcttaatagttttcacattgatgcaattgattctattt--------------------gtgatgcagattgtgacatgccatttggtgacgt |
319 |
Q |
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| T |
48044074 |
caatatcgtcttaatagttttcacattgatgcaattgattctatttgtagctttcggaggggatttgtgatgcagattgtgacatgccatttggtgacgt |
48044173 |
T |
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| Q |
320 |
gacatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagggagataggtcacgctaatttgatttgaata |
419 |
Q |
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| T |
48044174 |
gccatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagggagataggtcacgcttatttgatttgaata |
48044273 |
T |
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| Q |
420 |
attctccgagtcaattaatagctagtaaggtgaggcttgaaacaagattgttcatgggacctatgcttctcca |
492 |
Q |
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| T |
48044274 |
attctcagagtcaattaatagctagtaaggtgaggcttgaaacaagattgttcatgggacctatgtttctcca |
48044346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 290 - 409
Target Start/End: Original strand, 48051839 - 48051958
Alignment:
| Q |
290 |
tgcagattgtgacatgccatttggtgacgtgacatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagg |
389 |
Q |
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| T |
48051839 |
tgcagattgtgacatgccatttggtgacgtgccatcactcttttattcattttatttgctggaaaataacatggcagtgtgccacatcagcatatagagg |
48051938 |
T |
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| Q |
390 |
gagataggtcacgctaattt |
409 |
Q |
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| T |
48051939 |
gagatagatcatgctaattt |
48051958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 48057247 - 48057306
Alignment:
| Q |
215 |
caagtttgtaacaacattgatgtgacaatatcgtcttaatagttttcacattgatgcaat |
274 |
Q |
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| T |
48057247 |
caagtttgctacaaaattgatgaaacaatatcatcctaatagttttcacattgatgcaat |
48057306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 48057003 - 48057095
Alignment:
| Q |
56 |
atggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcacaaaaaatggatgataattg |
148 |
Q |
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| T |
48057003 |
atggagttcatttcttgagacaggtagattctcataatcacctgcatcaacaacgtaacttagagttccggcaaaaaaagtggatgataattg |
48057095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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