View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_high_1 (Length: 804)
Name: NF9319_high_1
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 9 - 432
Target Start/End: Complemental strand, 39212843 - 39212417
Alignment:
| Q |
9 |
agaagcagagacggaaaaggatcccaaagcctgatcggagtttacaggtagcggcaacggaactccttgcttttcggtggcggcgccgccatcaaattcc |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39212843 |
agaaccagagacggaaaaggatcccaaagcctgatcggagtttacaggtagcggcaacggaactccttgcttttcggtggcggcgccgccatcaaattcc |
39212744 |
T |
|
| Q |
109 |
ctgctagtcctcggtgaattccgattgaaaacttcatcgaaactcttgggcttcttcttattgttacagttgctcttcttcttaatatcgccgttgtttc |
208 |
Q |
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| T |
39212743 |
ctgctagtcctcggtgaattccgattgaaaacttcatcgaaactcttgggcttcttcttattgttacagttgctcttcttcttaatatcgccgttgtttc |
39212644 |
T |
|
| Q |
209 |
ttatagcgttgatcggtgatt---tcatgaaattgaattgaagaacaccaccgccacgtgtttgttcttcttcatcgtcttcttcttcgttgttgatgtt |
305 |
Q |
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| T |
39212643 |
ttatagcgttgatcggtgatttcatcatgaaattgaattgaagaacaccaccgccacgtgtttgttcttcttcatcgtcttcttcttcgttgttgatgtt |
39212544 |
T |
|
| Q |
306 |
attacgctcttgtttattctttgacgactttttactccaccacaccggcattctaaaactgattttagagagaagaggaaaaacttcaacaaatagttag |
405 |
Q |
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| T |
39212543 |
attacgctcttgtttattctttgacgactttttactccaccacaccggcattctaaaactgattttagagagaagaggaaaaacttcaacaaatagttag |
39212444 |
T |
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| Q |
406 |
ttatagcagaagcagtgttgtctttat |
432 |
Q |
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| T |
39212443 |
ttatagcagaagcagtgttgtctttat |
39212417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 455 - 786
Target Start/End: Complemental strand, 39212388 - 39212062
Alignment:
| Q |
455 |
ttatatgattcatgaatgagctatgttatgttatggtgtagctagtgtgtgatttttgtataaggtgaagaaaacgacaaaacattggagggaccattac |
554 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39212388 |
ttatatgattcatgaatgag-----ttatgttatggtgtagctagtgtgtgatttttgtataaggtgaagaaaacgacaaaacgttggagggaccattac |
39212294 |
T |
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| Q |
555 |
agctaaggagaaatggattagagattgattattgctactttgtttttaattaattactcactaatcagcaaccagtgagtgatattaacgtccacaaact |
654 |
Q |
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| T |
39212293 |
agctaaggagaaatggattagagattgattattgctactttgtttttaattaattactcactaatcagcaaccagtgagtgatattaacgtccacaaact |
39212194 |
T |
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| Q |
655 |
aacactgttaacattaacaaccaaccgtgtctaatctctccgttagttatagttgtactggtaatagtacttgtgagaatcgacattggtgaatgtgctt |
754 |
Q |
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| T |
39212193 |
aacactgttaacattaacaaccaaccgtgtctaatctctccgttagttatagttgtactggtaatagtacttgtgagaatcgacattggtgaatgtgctt |
39212094 |
T |
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| Q |
755 |
tattaccgattccatgcgctggagccagaatg |
786 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39212093 |
tattaccgattccatgcgctggagccagaatg |
39212062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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