View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9319_high_10 (Length: 275)
Name: NF9319_high_10
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 25492686 - 25492940
Alignment:
| Q |
1 |
aactgatctctttaatcttggccttattccttaaagtccatgatgaagnnnnnnnnnnncaatatataattctccaatccctgagaggtaattatcttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25492686 |
aactgatctctttaatcttggccttattacttaaagtccatgatgaagaaataaaaaaacacaatataattctcctatccctgagaggtaattatcttct |
25492785 |
T |
|
| Q |
101 |
taaacatgatatgacaatattaattgaaaattatttaccaataccatcgttaattactgaccaacaacatggttaattaacgatgtatcactagcacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25492786 |
taaacatgatatgacaatattaattgaaaattatttactaataccatcgttaattactgactaacaacatggttaattaacgatgtatcactggcacatt |
25492885 |
T |
|
| Q |
201 |
atcggtaagatgcatctaacttggttaaccattttcaattaatatgttgcaacat |
255 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
25492886 |
atcggtaagctgcatctaacttagttaaccatggccaattaatatgttgcaacat |
25492940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 25501129 - 25501313
Alignment:
| Q |
64 |
atataattctccaatccctgagaggtaattatcttcttaaacatgatatgacaatattaattgaaaattatttaccaataccatcgttaattactgacca |
163 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25501129 |
atataattctcctagccctgag--gtaattatcttcttaaacatgatatgacaatattatatgaaaattatttaccaataccatcgttaattactgacta |
25501226 |
T |
|
| Q |
164 |
acaacatggttaattaacgatgtatcactagcacattatcggtaagatgcatctaac-ttggttaaccattttcaattaatatgttg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || ||||||||| | | |||||||||||| |
|
|
| T |
25501227 |
acaacatggttaattaacgatgtatcactgatccattattggtattatgcatctaactttagttaaccatgtccgattaatatgttg |
25501313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 25450102 - 25450155
Alignment:
| Q |
87 |
ggtaattatcttcttaaacatgatatg--acaatattaattgaaaattatttac |
138 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
25450102 |
ggtaattatgttcttaaacatgatatgccacaatattaattgaaaactatttac |
25450155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 116
Target Start/End: Original strand, 25429355 - 25429385
Alignment:
| Q |
86 |
aggtaattatcttcttaaacatgatatgaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
25429355 |
aggtaattatcttcttaaacatgatatgaca |
25429385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25501065 - 25501105
Alignment:
| Q |
1 |
aactgatctctttaatcttggccttattccttaaagtccat |
41 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||||| |
|
|
| T |
25501065 |
aactaatctctttaatcttggcctttttacttaaagtccat |
25501105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University