View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9319_low_10 (Length: 425)

Name: NF9319_low_10
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9319_low_10
NF9319_low_10
[»] chr7 (7 HSPs)
chr7 (15-213)||(9987691-9987889)
chr7 (214-268)||(9987051-9987105)
chr7 (292-362)||(4634017-4634087)
chr7 (354-408)||(22763439-22763493)
chr7 (288-361)||(32238934-32239007)
chr7 (214-248)||(39286164-39286198)
chr7 (220-257)||(17218944-17218981)
[»] chr8 (5 HSPs)
chr8 (17-218)||(14331086-14331287)
chr8 (214-268)||(14330348-14330402)
chr8 (292-358)||(15151304-15151370)
chr8 (288-358)||(16821990-16822060)
chr8 (214-248)||(24251056-24251090)
[»] chr5 (3 HSPs)
chr5 (17-218)||(21724558-21724759)
chr5 (17-213)||(21804284-21804480)
chr5 (220-268)||(1643238-1643286)
[»] chr6 (2 HSPs)
chr6 (292-425)||(13627826-13627959)
chr6 (288-358)||(27991558-27991628)
[»] chr2 (4 HSPs)
chr2 (67-137)||(6061728-6061798)
chr2 (287-362)||(37081361-37081436)
chr2 (288-362)||(19569574-19569648)
chr2 (288-362)||(17673448-17673522)
[»] chr1 (5 HSPs)
chr1 (288-362)||(23971075-23971149)
chr1 (215-248)||(30774711-30774744)
chr1 (214-248)||(23246238-23246272)
chr1 (288-362)||(28538498-28538572)
chr1 (288-362)||(2900403-2900474)
[»] chr4 (6 HSPs)
chr4 (288-362)||(2946652-2946726)
chr4 (214-248)||(18749192-18749226)
chr4 (289-362)||(6136095-6136168)
chr4 (288-357)||(17405187-17405256)
chr4 (215-248)||(2302764-2302797)
chr4 (215-248)||(8515935-8515968)
[»] chr3 (6 HSPs)
chr3 (308-362)||(9021814-9021868)
chr3 (214-248)||(17720886-17720920)
chr3 (214-248)||(19022115-19022149)
chr3 (215-286)||(13031596-13031667)
chr3 (215-248)||(4176008-4176041)
chr3 (215-248)||(15714335-15714368)
[»] scaffold0094 (1 HSPs)
scaffold0094 (214-268)||(6311-6365)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 9987889 - 9987691
Alignment:
Q  15 agcacagaacacaacaaagttcaacataaactacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactca 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9987889 agcacaaaacacaacaaagttcaacataaactacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactca 9987790  T
Q  115 ggttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctaataaacagcaactcaagaacagcaaaaatgcaaaccaca 213  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9987789 ggttttgaatacataagggtgtaaatctagccaaagatcccaataagatatatagtcctaataaacagcaactcaagaacagcaaaaatgcaaaccaca 9987691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 9987105 - 9987051
Alignment:
Q  214 aaaaccgtcccaaatccgtccgaaaaattcagacagataagcttccgtcccaaaa 268  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9987105 aaaaccgtcctaaatccgtccgaaaaattcagacagataagcttccgtcccaaaa 9987051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 4634087 - 4634017
Alignment:
Q  292 agaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatctttg 362  Q
    ||||||||||| || |||||||||||||   || ||||||||||||||||||| |||| ||||||||||||    
T  4634087 agaaatgaacggaaagactattaaacatttcatatgacattatgcaagaaaaatacaaatatgaatctttg 4634017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 22763439 - 22763493
Alignment:
Q  354 gaatctttgccaaattttttatgtagagcacccttttgagattcaatatcaattt 408  Q
    ||||||||||||||   | |||| |||||||||||||||||||||||||||||||    
T  22763439 gaatctttgccaaaaaatatatggagagcacccttttgagattcaatatcaattt 22763493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 32239007 - 32238934
Alignment:
Q  288 taagagaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatcttt 361  Q
    ||||| |||||||| ||| |||||||||| ||   |||||||||| ||||| |||||| |||||||||||||||    
T  32239007 taagaaaaatgaaccaaaagactattaaatatttcatttgacattgtgcaacaaaaacgcaagtatgaatcttt 32238934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 39286198 - 39286164
Alignment:
Q  214 aaaaccgtcccaaatccgtccgaaaaattcagaca 248  Q
    ||||||||||||||| |||||||||||||||||||    
T  39286198 aaaaccgtcccaaattcgtccgaaaaattcagaca 39286164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 17218944 - 17218981
Alignment:
Q  220 gtcccaaatccgtccgaaaaattcagacagataagctt 257  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  17218944 gtcccaaatctgtccgaaaaattcagacaaataagctt 17218981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 14331287 - 14331086
Alignment:
Q  17 cacagaacacaacaaagttcaacataaactacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactcagg 116  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14331287 cacaaaacacaacaaagttcaacataaattacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactcagg 14331188  T
Q  117 ttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctaataaacagcaactcaagaacagcaaaaatgcaaaccacaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  14331187 ttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctgataaacaacaactcaagaacagcgaaaatgcaaaccacaaaa 14331088  T
Q  217 ac 218  Q
    ||    
T  14331087 ac 14331086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 14330402 - 14330348
Alignment:
Q  214 aaaaccgtcccaaatccgtccgaaaaattcagacagataagcttccgtcccaaaa 268  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14330402 aaaaccgtcccaaatccgtccgaaaaattcagacaaataagcttccgtcccaaaa 14330348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 15151304 - 15151370
Alignment:
Q  292 agaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatc 358  Q
    |||||||||||||| |||||||||||||   ||||||||||||||||||| ||||||||||| ||||    
T  15151304 agaaatgaacgaaaagactattaaacatttcatttgacattatgcaagaagaacacaagtataaatc 15151370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 358
Target Start/End: Original strand, 16821990 - 16822060
Alignment:
Q  288 taagagaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatc 358  Q
    |||||||||||| | ||| |||||||||||||   |||||||||| | |||||||||||||||||||||||    
T  16821990 taagagaaatgatctaaaagactattaaacatttcatttgacattgtacaagaaaaacacaagtatgaatc 16822060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 24251090 - 24251056
Alignment:
Q  214 aaaaccgtcccaaatccgtccgaaaaattcagaca 248  Q
    ||||||||||||||||||||| |||||||||||||    
T  24251090 aaaaccgtcccaaatccgtccaaaaaattcagaca 24251056  T

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Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 21724759 - 21724558
Alignment:
Q  17 cacagaacacaacaaagttcaacataaactacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactcagg 116  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21724759 cacaaaacacaacaaagttcaacataaattacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactcagg 21724660  T
Q  117 ttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctaataaacagcaactcaagaacagcaaaaatgcaaaccacaaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  21724659 ttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctgataaacaacaactcaagaacagcgaaaatgcaaaccacaaaa 21724560  T
Q  217 ac 218  Q
    ||    
T  21724559 ac 21724558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 21804480 - 21804284
Alignment:
Q  17 cacagaacacaacaaagttcaacataaactacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactcagg 116  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21804480 cacaaaacacaacaaagttcaacataaattacaatagttcaacgttattttgttaaaatatctcaacaccattcaagaaattagcattctagtactcagg 21804381  T
Q  117 ttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctaataaacagcaactcaagaacagcaaaaatgcaaaccaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||    
T  21804380 ttttgaatacataagggtgtaaatctagccaaagatcctaataagatatatagtcctgataaacaacaactcaagaacagcgaaaatgcaaaccaca 21804284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 1643238 - 1643286
Alignment:
Q  220 gtcccaaatccgtccgaaaaattcagacagataagcttccgtcccaaaa 268  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  1643238 gtcccaaatccatccgaaaaattcaaacaaataagcttccgtcccaaaa 1643286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 292 - 425
Target Start/End: Original strand, 13627826 - 13627959
Alignment:
Q  292 agaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatctttgccaaattttttatgtagagcacccttttg 391  Q
    |||| |||||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  13627826 agaagtgaacgaaatgactattaaacattttatttgacattatgcaagaaaaacacaaatatgaatctttgccaaatttattatgtagagcacccttttg 13627925  T
Q  392 agattcaatatcaatttagcatttggtaaaaatg 425  Q
    ||||||||||||||||||||| ||||||||||||    
T  13627926 agattcaatatcaatttagcacttggtaaaaatg 13627959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 358
Target Start/End: Complemental strand, 27991628 - 27991558
Alignment:
Q  288 taagagaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatc 358  Q
    |||| |||||||| | || |||||||||||||   |||| ||||||||||| || ||||||||||||||||    
T  27991628 taagggaaatgaatggaaagactattaaacatttcattttacattatgcaaaaagaacacaagtatgaatc 27991558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 6061728 - 6061798
Alignment:
Q  67 tgttaaaatatctcaacaccattcaagaaattagcattctagtactcaggttttgaatacataagggtgta 137  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  6061728 tgttaaaagatctcaacaccattcaagaaattagcattgtagtactcaggttttgaataaataagggtgta 6061798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 362
Target Start/End: Complemental strand, 37081436 - 37081361
Alignment:
Q  287 ataagagaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatctttg 362  Q
    |||||||||||||||| || |||||| ||||||   |||| | ||| |||||||| ||||||||||||||||||||    
T  37081436 ataagagaaatgaacggaaagactatcaaacattttattttatattgtgcaagaagaacacaagtatgaatctttg 37081361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 19569574 - 19569648
Alignment:
Q  288 taagagaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatctttg 362  Q
    ||||| ||||||| | || |||||||||||||   |||||||||| |||||||||||||||| ||||||| ||||    
T  19569574 taagataaatgaatggaaagactattaaacatttcatttgacattgtgcaagaaaaacacaaatatgaatttttg 19569648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 362
Target Start/End: Complemental strand, 17673522 - 17673448
Alignment:
Q  288 taagagaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatctttg 362  Q
    ||||||||||||| | || |||||| ||||||   ||||||| || |||||||| |||||||| |||||||||||    
T  17673522 taagagaaatgaatggaaagactatgaaacatttcatttgacgttgtgcaagaagaacacaagcatgaatctttg 17673448  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 362
Target Start/End: Complemental strand, 23971149 - 23971075
Alignment:
Q  288 taagagaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatctttg 362  Q
    ||||||||||||||  || |||||||||||||   |||||||||| |||||||||||||||||||||||||||||    
T  23971149 taagagaaatgaactgaaagactattaaacatttcatttgacattgtgcaagaaaaacacaagtatgaatctttg 23971075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 30774744 - 30774711
Alignment:
Q  215 aaaccgtcccaaatccgtccgaaaaattcagaca 248  Q
    ||||||||||||||||||||||||||||||||||    
T  30774744 aaaccgtcccaaatccgtccgaaaaattcagaca 30774711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 23246272 - 23246238
Alignment:
Q  214 aaaaccgtcccaaatccgtccgaaaaattcagaca 248  Q
    ||||| |||||||||||||||||||||||||||||    
T  23246272 aaaactgtcccaaatccgtccgaaaaattcagaca 23246238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 28538498 - 28538572
Alignment:
Q  288 taagagaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatctttg 362  Q
    ||||||||||||| | || || ||| ||||||   |||||||||| ||| |||| ||||||||||||||||||||    
T  28538498 taagagaaatgaatggaaagattatgaaacatttcatttgacattgtgctagaagaacacaagtatgaatctttg 28538572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 2900403 - 2900474
Alignment:
Q  288 taagagaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatctttg 362  Q
    ||||||||||||| | || |||||||||||||   |||||||||| ||||||   ||||||||||| ||||||||    
T  2900403 taagagaaatgaatggaaagactattaaacatttcatttgacattgtgcaag---aacacaagtataaatctttg 2900474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 2946652 - 2946726
Alignment:
Q  288 taagagaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatctttg 362  Q
    ||||||||||||| | || ||||||| |||||   |||||||||| |||||||| |||||| |||||||||||||    
T  2946652 taagagaaatgaatggaaagactatttaacatttcatttgacattgtgcaagaagaacacatgtatgaatctttg 2946726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 18749192 - 18749226
Alignment:
Q  214 aaaaccgtcccaaatccgtccgaaaaattcagaca 248  Q
    |||||||||||||||||||||||||||||||||||    
T  18749192 aaaaccgtcccaaatccgtccgaaaaattcagaca 18749226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 6136095 - 6136168
Alignment:
Q  289 aagagaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatctttg 362  Q
    |||||||||||| | || |||||||||||||   |||||| ||| |||||||| |||||| |||||||||||||    
T  6136095 aagagaaatgaatggaaagactattaaacatttcatttgatattgtgcaagaagaacacatgtatgaatctttg 6136168  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 17405256 - 17405187
Alignment:
Q  288 taagagaaatgaacgaaatgactattaaacataaaatttgacattatgcaagaaaaacacaagtatgaat 357  Q
    ||||| ||||||| || | |||||||||||||   |||||||||| |||||||| |||||||||||||||    
T  17405256 taagataaatgaatgagaagactattaaacatttcatttgacattgtgcaagaagaacacaagtatgaat 17405187  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 2302764 - 2302797
Alignment:
Q  215 aaaccgtcccaaatccgtccgaaaaattcagaca 248  Q
    ||||||||||||||| ||||||||||||||||||    
T  2302764 aaaccgtcccaaatctgtccgaaaaattcagaca 2302797  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 8515935 - 8515968
Alignment:
Q  215 aaaccgtcccaaatccgtccgaaaaattcagaca 248  Q
    |||||||| |||||||||||||||||||||||||    
T  8515935 aaaccgtctcaaatccgtccgaaaaattcagaca 8515968  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 9021868 - 9021814
Alignment:
Q  308 actattaaacataaaatttgacattatgcaagaaaaacacaagtatgaatctttg 362  Q
    ||||||||||||   |||||||||| |||||||| ||||||||||||||||||||    
T  9021868 actattaaacatttcatttgacattgtgcaagaagaacacaagtatgaatctttg 9021814  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 17720886 - 17720920
Alignment:
Q  214 aaaaccgtcccaaatccgtccgaaaaattcagaca 248  Q
    |||||||||||||||||||||||||||||||||||    
T  17720886 aaaaccgtcccaaatccgtccgaaaaattcagaca 17720920  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 19022115 - 19022149
Alignment:
Q  214 aaaaccgtcccaaatccgtccgaaaaattcagaca 248  Q
    |||||||||||||||||||||||||||||||||||    
T  19022115 aaaaccgtcccaaatccgtccgaaaaattcagaca 19022149  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 13031596 - 13031667
Alignment:
Q  215 aaaccgtcccaaatccgtccgaaaaattcagacagataagcttccgtcccaaaacacggattttttagtagt 286  Q
    |||| |||||||||||||||||| |||||||||| | | |  ||||||| ||||||| | ||||||||||||    
T  13031596 aaactgtcccaaatccgtccgaacaattcagacaaaaacgtatccgtccgaaaacactgtttttttagtagt 13031667  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 4176008 - 4176041
Alignment:
Q  215 aaaccgtcccaaatccgtccgaaaaattcagaca 248  Q
    ||||| ||||||||||||||||||||||||||||    
T  4176008 aaaccatcccaaatccgtccgaaaaattcagaca 4176041  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 15714368 - 15714335
Alignment:
Q  215 aaaccgtcccaaatccgtccgaaaaattcagaca 248  Q
    ||||||||| ||||||||||||||||||||||||    
T  15714368 aaaccgtccaaaatccgtccgaaaaattcagaca 15714335  T

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Target: scaffold0094 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 6365 - 6311
Alignment:
Q  214 aaaaccgtcccaaatccgtccgaaaaattcagacagataagcttccgtcccaaaa 268  Q
    ||||| ||||||||||||||| ||||||||||||| || | ||||||||| ||||    
T  6365 aaaactgtcccaaatccgtccaaaaaattcagacaaatcaacttccgtccgaaaa 6311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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