View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_11 (Length: 396)
Name: NF9319_low_11
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 85 - 380
Target Start/End: Original strand, 33383700 - 33383995
Alignment:
| Q |
85 |
ttaagctcacttttgacaaatttggttcacgtatcaaattcaaaattaattaccgagttataatttaatctatattcaagttgactcggtttatcgtaaa |
184 |
Q |
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| T |
33383700 |
ttaagctcacttttgacaaatttggttcacgtatcaaatttaaaattaattaccgagttagaatttaatctatattcaagttgactcggtttattgtaaa |
33383799 |
T |
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| Q |
185 |
ccttcatttttagttaaaacacaatatttatctataattttgtttagggtattttaatttgtttaaattttggatgtcacaagaaaatcacaaaaaattt |
284 |
Q |
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| T |
33383800 |
ccttcatttttagttaaaacacattatttatctataattttgtttggagtattttaatttgtttaaattttggattttacaagaaaatcacaaaaaattt |
33383899 |
T |
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| Q |
285 |
ctcgcggttaaaaatagatgttcaggtacccgtgaacatagatctttatatgaccattgcatataatatgtagtagatgatgttcgaactatgaag |
380 |
Q |
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| T |
33383900 |
ctcacggttaaaaatagatgttaaggtacccgtgaacatagatctttatatgaccattgcatataatatgtagtggatgatgttcgaactgtgaag |
33383995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 33380737 - 33380827
Alignment:
| Q |
1 |
taatcattgttggacctcagtatttggcctgattgctcatttatgaatgagctttcttgttcgatgatccataagatcattgggttaagct |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
33380737 |
taatcattgttggacctcagtatttggcctgattgctcatttatgaatgagctttcttgttcgatgatccataagatcactgggttgagct |
33380827 |
T |
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