View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_13 (Length: 381)
Name: NF9319_low_13
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 26478309 - 26477947
Alignment:
| Q |
1 |
tgctgaagctgtaatattggttatatacacttctttcacacttccaagaggaggaacaatagcaattaaaaatggcttatcatctatatacatctgaatt |
100 |
Q |
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| T |
26478309 |
tgctgaagctgtaatattggttatatacacttctttcacacttccaagaggaggaacaatagcacttaaaaatggcttatcatctatatacatctgaatt |
26478210 |
T |
|
| Q |
101 |
gatctttttccaaaagcacttttcataacttctgagaaataagcatttatataaacatcattttcctctgctggaagcctattgataaattgcatgtatt |
200 |
Q |
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| T |
26478209 |
gatctttttccaaaagcactttccattatttctgagaaataagcatttatataaacatcattttcctctgctggaagcctattgataaattgcatgtatt |
26478110 |
T |
|
| Q |
201 |
catttgtgcttgatgaaacaatagcattttttaatgcagcttctggtggacgatcttctgctgtactgatgtcaaaggttgattcctcgctttttacttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26478109 |
catttgtgcttgatgaaacaatagcattttttaatgcagcttctggtggacgatcttctgctgtactgatgtcaaaggttgattcctcgctttttacttc |
26478010 |
T |
|
| Q |
301 |
ggaaagtaggataccgtatgccggtgtccatattcgatcgtaaatgtcgtccgggtacctagt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26478009 |
ggaaagtaggataccgtatgccggtgtccatattcgatcgtaaatgtcgtccggatacctagt |
26477947 |
T |
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