View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9319_low_14 (Length: 378)

Name: NF9319_low_14
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9319_low_14
NF9319_low_14
[»] chr6 (11 HSPs)
chr6 (18-378)||(13627972-13628332)
chr6 (18-90)||(383764-383836)
chr6 (31-90)||(3116133-3116192)
chr6 (18-90)||(1347021-1347093)
chr6 (18-90)||(1354761-1354833)
chr6 (31-90)||(12885985-12886044)
chr6 (18-90)||(29355859-29355933)
chr6 (18-83)||(23930138-23930203)
chr6 (57-90)||(30786378-30786411)
chr6 (40-84)||(11395842-11395886)
chr6 (22-90)||(13267788-13267856)
[»] chr1 (25 HSPs)
chr1 (18-90)||(27474362-27474434)
chr1 (18-90)||(45402178-45402250)
chr1 (18-90)||(1517315-1517387)
chr1 (18-90)||(4349720-4349792)
chr1 (18-89)||(23768325-23768396)
chr1 (18-84)||(23796547-23796613)
chr1 (18-90)||(34725102-34725174)
chr1 (18-90)||(35253191-35253263)
chr1 (18-90)||(46247957-46248029)
chr1 (18-101)||(38478275-38478358)
chr1 (18-84)||(10378745-10378811)
chr1 (18-87)||(47214591-47214660)
chr1 (31-90)||(42304211-42304270)
chr1 (31-82)||(45264411-45264462)
chr1 (19-90)||(46991887-46991958)
chr1 (42-84)||(9939570-9939612)
chr1 (18-84)||(14617120-14617186)
chr1 (20-90)||(45812541-45812611)
chr1 (57-90)||(10668348-10668381)
chr1 (31-84)||(18741967-18742020)
chr1 (31-80)||(27201744-27201793)
chr1 (40-81)||(33594144-33594185)
chr1 (18-90)||(19414519-19414591)
chr1 (18-82)||(32632569-32632633)
chr1 (20-84)||(43768223-43768287)
[»] chr7 (24 HSPs)
chr7 (242-348)||(9416179-9416284)
chr7 (18-90)||(7879697-7879769)
chr7 (18-90)||(31591113-31591185)
chr7 (57-90)||(38262200-38262233)
chr7 (18-83)||(40463935-40464000)
chr7 (18-90)||(21172013-21172085)
chr7 (18-90)||(27889320-27889392)
chr7 (18-82)||(33871922-33871986)
chr7 (18-90)||(35787273-35787345)
chr7 (18-90)||(42391104-42391176)
chr7 (18-90)||(47077859-47077931)
chr7 (18-90)||(48735126-48735198)
chr7 (19-90)||(23618981-23619052)
chr7 (19-90)||(32758319-32758390)
chr7 (18-84)||(38604585-38604652)
chr7 (18-84)||(2541029-2541095)
chr7 (18-80)||(8148960-8149021)
chr7 (18-80)||(23419688-23419750)
chr7 (18-84)||(28362156-28362221)
chr7 (19-84)||(35334826-35334891)
chr7 (57-90)||(36602545-36602578)
chr7 (18-90)||(10693077-10693149)
chr7 (18-90)||(11617592-11617664)
chr7 (18-90)||(18512457-18512529)
[»] chr3 (29 HSPs)
chr3 (18-83)||(6411833-6411898)
chr3 (18-90)||(22609846-22609918)
chr3 (18-90)||(25517174-25517246)
chr3 (18-90)||(39203595-39203667)
chr3 (18-90)||(40272816-40272888)
chr3 (18-90)||(54484772-54484844)
chr3 (18-90)||(12914039-12914111)
chr3 (20-84)||(45948848-45948912)
chr3 (19-100)||(24577917-24577998)
chr3 (18-82)||(31904868-31904933)
chr3 (42-90)||(5173723-5173771)
chr3 (18-90)||(26869787-26869859)
chr3 (18-90)||(52926223-52926295)
chr3 (18-90)||(13628794-13628868)
chr3 (31-90)||(24851305-24851364)
chr3 (19-82)||(33235614-33235676)
chr3 (40-90)||(516515-516565)
chr3 (57-99)||(4495671-4495713)
chr3 (44-82)||(31922851-31922889)
chr3 (18-84)||(34771374-34771440)
chr3 (57-90)||(10484620-10484653)
chr3 (18-95)||(31592928-31593005)
chr3 (57-90)||(40390361-40390394)
chr3 (57-90)||(47624219-47624252)
chr3 (57-90)||(54032575-54032608)
chr3 (18-90)||(1217169-1217241)
chr3 (18-90)||(7943071-7943143)
chr3 (18-90)||(15797301-15797373)
chr3 (18-90)||(22122921-22122993)
[»] scaffold0057 (1 HSPs)
scaffold0057 (18-90)||(46890-46962)
[»] chr8 (21 HSPs)
chr8 (18-90)||(45071323-45071395)
chr8 (18-99)||(35261738-35261819)
chr8 (18-89)||(29521690-29521761)
chr8 (18-90)||(39460998-39461072)
chr8 (20-90)||(12625951-12626021)
chr8 (18-84)||(44530208-44530274)
chr8 (18-95)||(2626581-2626658)
chr8 (18-84)||(16013513-16013581)
chr8 (57-94)||(18164760-18164797)
chr8 (18-90)||(13160760-13160832)
chr8 (18-90)||(28817630-28817702)
chr8 (18-82)||(29877153-29877217)
chr8 (18-90)||(31457231-31457303)
chr8 (18-82)||(36720855-36720919)
chr8 (55-90)||(10857925-10857960)
chr8 (18-84)||(8483948-8484014)
chr8 (18-84)||(12670260-12670326)
chr8 (20-90)||(26102578-26102648)
chr8 (17-82)||(8897776-8897841)
chr8 (57-90)||(27468096-27468129)
chr8 (18-90)||(30454101-30454173)
[»] chr2 (27 HSPs)
chr2 (18-90)||(9671238-9671310)
chr2 (18-90)||(10546222-10546294)
chr2 (18-90)||(11514495-11514566)
chr2 (18-90)||(24859992-24860064)
chr2 (18-90)||(8455320-8455392)
chr2 (18-90)||(36871551-36871622)
chr2 (18-88)||(25641560-25641630)
chr2 (17-90)||(23397822-23397895)
chr2 (18-78)||(99281-99341)
chr2 (31-95)||(10543772-10543836)
chr2 (17-90)||(14530376-14530451)
chr2 (18-90)||(21779265-21779337)
chr2 (19-82)||(14444788-14444851)
chr2 (18-101)||(19977707-19977790)
chr2 (18-97)||(25079714-25079793)
chr2 (57-95)||(124913-124951)
chr2 (18-80)||(17896319-17896381)
chr2 (18-88)||(26684626-26684696)
chr2 (18-88)||(39499236-39499306)
chr2 (17-95)||(40762233-40762311)
chr2 (18-84)||(44643582-44643648)
chr2 (57-90)||(22371210-22371243)
chr2 (18-95)||(25632568-25632645)
chr2 (31-88)||(31158445-31158502)
chr2 (18-90)||(17668061-17668133)
chr2 (18-90)||(25249742-25249814)
chr2 (18-74)||(32781308-32781364)
[»] chr5 (13 HSPs)
chr5 (19-90)||(16957374-16957445)
chr5 (18-82)||(7097772-7097836)
chr5 (18-90)||(24448949-24449021)
chr5 (40-95)||(25622541-25622596)
chr5 (18-84)||(16880657-16880723)
chr5 (40-94)||(39801597-39801651)
chr5 (18-90)||(32703481-32703553)
chr5 (18-90)||(38879640-38879714)
chr5 (44-90)||(29184065-29184111)
chr5 (18-84)||(43574665-43574731)
chr5 (18-90)||(8169988-8170060)
chr5 (18-90)||(34154818-34154890)
chr5 (22-90)||(35710374-35710442)
[»] scaffold0258 (1 HSPs)
scaffold0258 (18-90)||(13028-13100)
[»] scaffold0180 (1 HSPs)
scaffold0180 (18-90)||(24137-24209)
[»] chr4 (30 HSPs)
chr4 (18-90)||(30639438-30639510)
chr4 (18-90)||(40915887-40915959)
chr4 (17-81)||(41018807-41018871)
chr4 (20-78)||(14983895-14983953)
chr4 (18-95)||(20225041-20225118)
chr4 (18-90)||(20639662-20639735)
chr4 (18-90)||(5648317-5648389)
chr4 (18-90)||(6430630-6430702)
chr4 (18-90)||(10277761-10277833)
chr4 (18-82)||(12711461-12711525)
chr4 (18-90)||(29207902-29207974)
chr4 (31-83)||(30352591-30352643)
chr4 (18-90)||(51865042-51865114)
chr4 (19-90)||(25629109-25629180)
chr4 (31-90)||(44363134-44363193)
chr4 (55-90)||(48033422-48033457)
chr4 (56-90)||(19425922-19425956)
chr4 (20-82)||(30690188-30690250)
chr4 (42-84)||(34256992-34257034)
chr4 (40-90)||(38755912-38755962)
chr4 (40-90)||(40553941-40553991)
chr4 (18-84)||(55766476-55766542)
chr4 (57-90)||(11394950-11394983)
chr4 (57-90)||(11404677-11404710)
chr4 (31-84)||(28494223-28494276)
chr4 (57-90)||(35532090-35532123)
chr4 (57-96)||(2813225-2813265)
chr4 (20-84)||(9987844-9987908)
chr4 (18-90)||(48598829-48598901)
chr4 (18-82)||(55830733-55830797)
[»] scaffold0168 (1 HSPs)
scaffold0168 (18-90)||(30636-30708)
[»] scaffold0015 (1 HSPs)
scaffold0015 (18-90)||(48638-48710)
[»] scaffold0311 (1 HSPs)
scaffold0311 (22-81)||(10873-10932)
[»] scaffold0187 (2 HSPs)
scaffold0187 (18-90)||(10054-10126)
scaffold0187 (18-90)||(20382-20454)


Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 13628332 - 13627972
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttgttaatactgcattgcatttttg 117  Q
    |||||||||||||||||||  ||||||||||  |||   |||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||||    
T  13628332 cgtacaatacactaaatagcaagaccccttcctagactctgcgtatgcgggagttttagtgcactggattgccctttgttaatactacattgcatttttg 13628233  T
Q  118 tacctcacaataaccaccactttaatttcctttactgttatcatacgtttctacttctcctgatattgttctaagttcctttaaaaccctagtagcctac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13628232 tacctcacaataaccaccactttaatttcctttactgttatcatacgtttctacttctcctgatattgttctaagttcctttaaaaccctagtagcctac 13628133  T
Q  218 accaacaaatagaattaagccattatcaccatctttcaaatagtttcaaaatcttattctaaacttgtgtagcttcgaagtttgaatccttccactattg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13628132 accaacaaatagaattaagccattatcaccatctttcaaatagtttcaaaatcttattctaaacttgtgtagcttcgaagtttgaattcttccactattg 13628033  T
Q  318 caagcaatttgtgcggctttgtagtgtgctgctgttaggggggaagtgcctaaggtaaggc 378  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13628032 caagcaatttgtgcggctttgtagtgtgctgctgttaggagggaagtgcctaaggtaaggc 13627972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 383836 - 383764
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| |||||||||||||| | ||||||||||||||||| ||| |||||| |||||    
T  383836 cgtacaatacaccaaattgtgggaccccttctcagaccctgcgtatgcgggagcttcagtccaccgggttgcc 383764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 3116192 - 3116133
Alignment:
Q  31 aaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||| ||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  3116192 aaatggtgggaccccttctcggaccttgcgtatgcgggagctttagtacaccggattgcc 3116133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 1347021 - 1347093
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  1347021 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 1347093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 1354833 - 1354761
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  1354833 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 1354761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 12885985 - 12886044
Alignment:
Q  31 aaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||| ||| ||||||||| |||| | |||||||| ||||||||||||||||||| |||||    
T  12885985 aaatggtgggaccccttcccagaccctgcgtatgtgggagctttagtgcaccgggttgcc 12886044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 29355933 - 29355859
Alignment:
Q  18 cgtacaatacactaa--atagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| ||  || ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  29355933 cgtacaatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 29355859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 23930203 - 23930138
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccg 83  Q
    |||||||||||| | || ||| ||||||||| | || | ||| |||||||||||||||||||||||    
T  23930203 cgtacaatacaccagatggtgggaccccttcacggaccctgcttatgcgggagctttagtgcaccg 23930138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 30786411 - 30786378
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||    
T  30786411 tgcgtatgcgggagctttagtgcaccgggttgcc 30786378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 11395842 - 11395886
Alignment:
Q  40 gaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    ||||||||| | |||| ||||||||||||||||||||| ||||||    
T  11395842 gaccccttcccggatcctgcgtatgcgggagctttagtccaccgg 11395886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 13267788 - 13267856
Alignment:
Q  22 caatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||| |||| ||| |||||||||   || | ||||||||||||||||| |||||||||| |||||    
T  13267788 caatacaccaaatggtgggaccccttcctggaccctgcgtatgcgggagcttcagtgcaccgggttgcc 13267856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 27474362 - 27474434
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||||| ||| ||| ||||||||| | || | ||||||||||||||||||||||||||||||||||    
T  27474362 cgtacaatacactgaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccggattgcc 27474434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 45402178 - 45402250
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| |||| | |||||||||||||||||||||||||||| |||||    
T  45402178 cgtacaatacaccaaatggtgggaccccttcccagaccctgcgtatgcgggagctttagtgcaccgggttgcc 45402250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 1517387 - 1517315
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| || | ||| |||||||||||||| | ||||||||| |||||||||||||||||| |||||    
T  1517387 cgtacaatacaccaattggtgggaccccttctcagaccctgcgtatgcaggagctttagtgcaccgggttgcc 1517315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 4349720 - 4349792
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  4349720 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 4349792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 23768396 - 23768325
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgc 89  Q
    |||||||||||| |||| ||| ||| ||||| |||| | |||||||||||||||||||||||| ||||||||    
T  23768396 cgtacaatacaccaaatggtgggacaccttcccagaccctgcgtatgcgggagctttagtgcagcggattgc 23768325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 23796547 - 23796613
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||||| |||| ||||||||||||| |||| | ||| ||||| ||||||||||||||||||    
T  23796547 cgtacaatacaccaaatggtgagaccccttcccagaccctgcatatgctggagctttagtgcaccgg 23796613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 34725174 - 34725102
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||||||||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  34725174 cgtacaatacactaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 34725102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 35253263 - 35253191
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| |||||||||||||||||    
T  35253263 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccggattgcc 35253191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 46248029 - 46247957
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | |||||||||||||||||||||| ||||| |||||    
T  46248029 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgtaccgggttgcc 46247957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 38478358 - 38478275
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttgttaata 101  Q
    |||||||||||| |||| |||  |||||||||| || | ||| |||||||||||| ||||||||||| ||||| ||| ||||||    
T  38478358 cgtacaatacaccaaatggtggaaccccttctcggaccctgcatatgcgggagctctagtgcaccgggttgcccttttttaata 38478275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 10378811 - 10378745
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||||| |||| ||| ||||||||||  || | ||| ||||||||||||||||||||||||    
T  10378811 cgtacaatacaccaaatggtgggaccccttcttggaccctgcatatgcgggagctttagtgcaccgg 10378745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 47214591 - 47214660
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggatt 87  Q
    |||||||||||| |||| ||| ||||||||| |||| | ||| |||||||||||| ||||||||| ||||    
T  47214591 cgtacaatacaccaaatggtgggaccccttcccagaccctgcatatgcgggagctctagtgcaccagatt 47214660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 42304270 - 42304211
Alignment:
Q  31 aaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||| ||| ||||||||| | || | |||||||| |||||||||||||||||||||||||    
T  42304270 aaatggtgggaccccttcccggaccctgcgtatgtgggagctttagtgcaccggattgcc 42304211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 45264462 - 45264411
Alignment:
Q  31 aaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    |||| ||| |||||||||||||| | ||| ||||||||||||||||||||||    
T  45264462 aaatggtgggaccccttctcagaccctgcatatgcgggagctttagtgcacc 45264411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 46991887 - 46991958
Alignment:
Q  19 gtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||  ||| ||| ||||||||| | || | |||||||| ||||||||||||||||||| |||||    
T  46991887 gtacaatacaccgaatggtgggaccccttcccggaccctgcgtatgtgggagctttagtgcaccgggttgcc 46991958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 9939570 - 9939612
Alignment:
Q  42 ccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    ||||||||| || | ||||||||||||||||||||||||||||    
T  9939570 ccccttctcggaccctgcgtatgcgggagctttagtgcaccgg 9939612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 14617120 - 14617186
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||||| |||| ||| || |||||| | || | ||| ||||||||||||||||||||||||    
T  14617120 cgtacaatacaccaaatggtgggatcccttcccggaccctgcatatgcgggagctttagtgcaccgg 14617186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 45812611 - 45812541
Alignment:
Q  20 tacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||| |||| ||| ||||||||| || | | ||| |||||||||||| ||||||||||| |||||    
T  45812611 tacaatacaccaaatggtgggaccccttcccaaaccctgcatatgcgggagctctagtgcaccgggttgcc 45812541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 10668348 - 10668381
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||    
T  10668348 tgcgtatgcgggagctttagtgcaccgggttgcc 10668381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 18742020 - 18741967
Alignment:
Q  31 aaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||| ||| ||||||||| |||| | |||||||||| |||||||||||||||||    
T  18742020 aaatggtgggaccccttcccagaccctgcgtatgcgagagctttagtgcaccgg 18741967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 27201744 - 27201793
Alignment:
Q  31 aaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgca 80  Q
    |||| ||| ||||||||| | || ||||||||||||||||||||||||||    
T  27201744 aaatggtgggaccccttcccggaccttgcgtatgcgggagctttagtgca 27201793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 33594185 - 33594144
Alignment:
Q  40 gaccccttctcagatcttgcgtatgcgggagctttagtgcac 81  Q
    ||||||||| |||| | |||||||||||||||||||||||||    
T  33594185 gaccccttcccagaccctgcgtatgcgggagctttagtgcac 33594144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 19414519 - 19414591
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| |  | | ||| |||||||||||| ||||||||||| |||||    
T  19414519 cgtacaatacaccaaatggtgggaccccttcccgtaccctgcatatgcgggagctctagtgcaccgggttgcc 19414591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 32632633 - 32632569
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    |||||||||||| |||| ||| ||||||||| || | | ||| ||||||||||||| ||||||||    
T  32632633 cgtacaatacaccaaatggtgggaccccttcccaaaccctgcatatgcgggagcttgagtgcacc 32632569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 43768223 - 43768287
Alignment:
Q  20 tacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||| || | ||| ||||||||| |||| | ||||||| ||||||||||| ||||||||    
T  43768223 tacaatacaccaattggtgggaccccttcccagaccctgcgtatacgggagctttaatgcaccgg 43768287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 348
Target Start/End: Complemental strand, 9416284 - 9416179
Alignment:
Q  242 atcaccatctttcaaatagtttcaaaatcttattctaaacttgtgtagcttcgaagtttgaatccttccactattgcaagcaatttgtgcggctttgtag 341  Q
    |||||||||||||||||| |||| || |||||||| ||||||| |||||||  || |||||||| ||||  | ||||||||| ||| |||||||||||||    
T  9416284 atcaccatctttcaaataatttccaagtcttattccaaacttg-gtagctttaaattttgaatctttcccatgttgcaagcattttctgcggctttgtag 9416186  T
Q  342 tgtgctg 348  Q
    | |||||    
T  9416185 tatgctg 9416179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 7879697 - 7879769
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||||||||||||||||| |||||||||| |||||    
T  7879697 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcttcagtgcaccgggttgcc 7879769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 31591185 - 31591113
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||| ||||| ||| ||||||||| | || ||||| |||||||||||| ||||||||||| |||||    
T  31591185 cgtacaatacaataaatggtgggaccccttcccggaccttgcatatgcgggagctctagtgcaccgggttgcc 31591113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 38262233 - 38262200
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||||||||||||||||||||||||||    
T  38262233 tgcgtatgcgggagctttagtgcaccggattgcc 38262200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 40463935 - 40464000
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccg 83  Q
    |||| ||||||| |||| ||| ||||||||||| || | ||||||||||||||||| |||||||||    
T  40463935 cgtataatacaccaaatggtgggaccccttctcggaccctgcgtatgcgggagcttcagtgcaccg 40464000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 21172085 - 21172013
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  21172085 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 21172013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 27889392 - 27889320
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | |||||||||||||||||| || |||||| |||||    
T  27889392 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttggtacaccgggttgcc 27889320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 33871986 - 33871922
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    |||||||||||| |||| ||| ||||||||| |||| | || ||||||| |||||||||||||||    
T  33871986 cgtacaatacaccaaatggtgggaccccttcccagaccctgtgtatgcgagagctttagtgcacc 33871922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 35787345 - 35787273
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| | | ||||||||| | || ||||||||||||||||||| | |||||||| |||||    
T  35787345 cgtacaatacaccaaatggcgggaccccttcccggaccttgcgtatgcgggagcttcaatgcaccgggttgcc 35787273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 42391176 - 42391104
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  42391176 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 42391104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 47077931 - 47077859
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| || | | | | |||||||||||| |||||||||||||||||    
T  47077931 cgtacaatacacaaaatggtgggaccccttcccaaaccctacatatgcgggagctctagtgcaccggattgcc 47077859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 48735198 - 48735126
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  48735198 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 48735126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 23619052 - 23618981
Alignment:
Q  19 gtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||  |||| ||| ||||||||| |||| ||||||| ||| |||||||||||||| ||| |||||    
T  23619052 gtacaatacatcaaatggtgggaccccttcgcagaccttgcgtttgcaggagctttagtgcagcgggttgcc 23618981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 32758319 - 32758390
Alignment:
Q  19 gtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  32758319 gtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 32758390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 38604585 - 38604652
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagcttt-agtgcaccgg 84  Q
    |||||||||||| |||| ||||||||||||  | || | |||||||||||||||||| ||||||||||    
T  38604585 cgtacaatacaccaaatggtgagacccctttccggaccctgcgtatgcgggagctttaagtgcaccgg 38604652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 2541095 - 2541029
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    ||||| |||||| |||| ||| ||||||||| | |  | ||||||||||||||||||||||||||||    
T  2541095 cgtactatacaccaaatggtgggaccccttcccggtccctgcgtatgcgggagctttagtgcaccgg 2541029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 8149021 - 8148960
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgca 80  Q
    |||||||||||| |||| ||| ||||||||| |||| |||||||||||| ||| |||||||||    
T  8149021 cgtacaatacaccaaatggtgggaccccttcccaga-cttgcgtatgcgagagttttagtgca 8148960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 23419750 - 23419688
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgca 80  Q
    |||||||||||| |||| ||| |||||||||  ||| ||||||| |||||| |||||||||||    
T  23419750 cgtacaatacaccaaatggtgggaccccttcctagaccttgcgtgtgcgggggctttagtgca 23419688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 28362221 - 28362156
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||||| |||| ||| ||||||||| |||| ||||| |||| ||||||||| |||||||||    
T  28362221 cgtacaatacaccaaatggtgggaccccttcccagaccttgcatatgtgggagcttt-gtgcaccgg 28362156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 35334891 - 35334826
Alignment:
Q  19 gtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||||  ||| ||| ||||||||| | || | ||||||||| ||||||||||||||||||    
T  35334891 gtacaatacaccgaatggtgggaccccttcccggaccctgcgtatgcaggagctttagtgcaccgg 35334826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 36602545 - 36602578
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||    
T  36602545 tgcgtatgcgggagctttagtgcaccgggttgcc 36602578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 10693149 - 10693077
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| |||||||| || |||||    
T  10693149 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcactgggttgcc 10693077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 11617664 - 11617592
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| |||||||||   || | ||||||||| ||| |||||||||||||| |||||    
T  11617664 cgtacaatacaccaaatggtgggaccccttcctggaccctgcgtatgcaggacctttagtgcaccgggttgcc 11617592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 18512529 - 18512457
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||||  ||| ||| ||||||||| | || | |||||||||||||||||| |||||| || |||||    
T  18512529 cgtacaatacaccgaatggtgggaccccttcccggaccctgcgtatgcgggagctttggtgcactgggttgcc 18512457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 6411898 - 6411833
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccg 83  Q
    |||||||||||| ||||  || ||||||||| |||| |||||||||||||||||||||||||||||    
T  6411898 cgtacaatacaccaaatgatgggaccccttcccagaccttgcgtatgcgggagctttagtgcaccg 6411833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 22609846 - 22609918
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || ||||||||||||||||||| |||||||||| |||||    
T  22609846 cgtacaatacaccaaatggtgggaccccttcccggaccttgcgtatgcgggagcttcagtgcaccgggttgcc 22609918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 25517246 - 25517174
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | |||| ||||||||| |||||||||||||||||| |||||    
T  25517246 cgtacaatacacaaaatggtgggaccccttcccggatcctgcgtatgctggagctttagtgcaccgggttgcc 25517174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 39203595 - 39203667
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || ||||| |||||||||||||||||||||||| |||||    
T  39203595 cgtacaatacaccaaatggtgggaccccttcccggaccttgcatatgcgggagctttagtgcaccgggttgcc 39203667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 40272888 - 40272816
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  40272888 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 40272816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 54484772 - 54484844
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  54484772 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 54484844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 12914111 - 12914039
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||| | |||||||| |||||    
T  12914111 cgtacaatacaccaaatggtgagaccccttcccagaccctgcatatgcgggagcttcaatgcaccgggttgcc 12914039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 45948912 - 45948848
Alignment:
Q  20 tacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||| || | ||| ||||||||||| || | ||||||||||||||||||||||||||||    
T  45948912 tacaatacaccaattggtgggaccccttctcggaccctgcgtatgcgggagctttagtgcaccgg 45948848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 24577917 - 24577998
Alignment:
Q  19 gtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttgttaat 100  Q
    |||||||||||||||| ||| || || ||| |||| | ||| ||| |||||||| ||||||||||||||||| ||| |||||    
T  24577917 gtacaatacactaaatggtgggatcctttcccagaccctgcatatacgggagctctagtgcaccggattgcccttttttaat 24577998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 31904933 - 31904868
Alignment:
Q  18 cgtacaatacactaaatagtgagacccc-ttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    |||||||||||| |||| ||| |||||| ||| |||||||| ||| ||||||||||||||||||||    
T  31904933 cgtacaatacaccaaatggtgggacccccttcccagatcttacgtgtgcgggagctttagtgcacc 31904868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 5173771 - 5173723
Alignment:
Q  42 ccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||| | || |||||||||||||||||||||||||||||| |||||    
T  5173771 ccccttcccggaccttgcgtatgcgggagctttagtgcaccgggttgcc 5173723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 26869787 - 26869859
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||  | || | |||||||||||||||||| ||||||||| |||||    
T  26869787 cgtacaatacaccaaatggtgggaccccttgccggaccatgcgtatgcgggagctttggtgcaccgggttgcc 26869859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 52926295 - 52926223
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||| ||||| | || | |||||||||||||||||||| ||||||| |||||    
T  52926295 cgtacaatacaccaaatggtgggacaccttcccggaccctgcgtatgcgggagctttagcgcaccgggttgcc 52926223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 13628868 - 13628794
Alignment:
Q  18 cgtacaatacactaa--atagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| ||  || ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  13628868 cgtacaatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 13628794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 24851364 - 24851305
Alignment:
Q  31 aaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||| ||| ||||||||| | |||| ||| |||||||||||||||||||||||| |||||    
T  24851364 aaatggtgggaccccttcccggatcctgcatatgcgggagctttagtgcaccgggttgcc 24851305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 33235614 - 33235676
Alignment:
Q  19 gtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    |||||||||||||||| ||| ||||||| | |||| ||| ||||||||| ||||||||||||||    
T  33235614 gtacaatacactaaatggtgggacccct-cgcagaccttacgtatgcggaagctttagtgcacc 33235676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 516515 - 516565
Alignment:
Q  40 gaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  516515 gaccccttccccgaccctgcgtatgcgggagctttagtgcaccgggttgcc 516565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 4495713 - 4495671
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgccatttgttaa 99  Q
    |||||||||||||||||||||||||||| ||||| ||| ||||    
T  4495713 tgcgtatgcgggagctttagtgcaccgggttgcccttttttaa 4495671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 31922889 - 31922851
Alignment:
Q  44 ccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  31922889 ccttcccagatcttacgtatgcgggagctttagtgcacc 31922851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 34771440 - 34771374
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| |||||||||||    
T  34771440 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgg 34771374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 10484653 - 10484620
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||    
T  10484653 tgcgtatgcgggagctttagtgcaccgggttgcc 10484620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 31592928 - 31593005
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttg 95  Q
    |||||||||||| |||| ||| ||| ||||| | || | ||| |||||||||||| ||||||||||| ||||| ||||    
T  31592928 cgtacaatacaccaaatggtgggactccttcccggaccctgcatatgcgggagctctagtgcaccgggttgccctttg 31593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 40390361 - 40390394
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||    
T  40390361 tgcgtatgcgggagctttagtgcaccgggttgcc 40390394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 47624219 - 47624252
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||    
T  47624219 tgcgtatgcgggagctttagtgcaccgggttgcc 47624252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 54032608 - 54032575
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||    
T  54032608 tgcgtatgcgggagctttagtgcaccgggttgcc 54032575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 1217169 - 1217241
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| | | ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  1217169 cgtacaatacaccaaatggcgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 1217241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 7943071 - 7943143
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||  |||| ||| || |||||  |||| | ||||||||||||||||||||||||| || |||||    
T  7943071 cgtacaatacatcaaatggtgggatccctttccagaccatgcgtatgcgggagctttagtgcactgggttgcc 7943143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 15797301 - 15797373
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||| ||||||| ||||||||||| |||||    
T  15797301 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgtgggagctctagtgcaccgggttgcc 15797373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 22122993 - 22122921
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||| ||||| ||||||||||| |||||    
T  22122993 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgagagctctagtgcaccgggttgcc 22122921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 46890 - 46962
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  46890 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 46962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 45071323 - 45071395
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || ||||||||||||||||||| |||||||||| |||||    
T  45071323 cgtacaatacaccaaatggtgggaccccttcccggaccttgcgtatgcgggagcttcagtgcaccgggttgcc 45071395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 35261738 - 35261819
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttgttaa 99  Q
    |||||||||||| |||| ||| |||||||||   || | |||||||||||||||||||||||||||| ||||| ||| ||||    
T  35261738 cgtacaatacaccaaatggtgggaccccttcctggaccctgcgtatgcgggagctttagtgcaccgggttgcccttttttaa 35261819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 29521761 - 29521690
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgc 89  Q
    |||||||||||| |||| ||| || ||| || |||| | |||||||||||||||||||||||||||| ||||    
T  29521761 cgtacaatacaccaaatggtgggaacccatcccagaccctgcgtatgcgggagctttagtgcaccgggttgc 29521690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 39461072 - 39460998
Alignment:
Q  18 cgtacaatacactaa--atagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| ||  || ||||||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  39461072 cgtacaatacaccaataatggtgagaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 39460998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 12625951 - 12626021
Alignment:
Q  20 tacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||| |||| ||| |||||| || | || | |||||||||||||||||||||||||||| |||||    
T  12625951 tacaatacaccaaatggtgggaccccctcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 12626021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 44530208 - 44530274
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||||| |||| ||| |||||||||   || | ||||||||||||||||||||||||||||    
T  44530208 cgtacaatacaccaaatggtgggaccccttcctggaccctgcgtatgcgggagctttagtgcaccgg 44530274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 2626581 - 2626658
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttg 95  Q
    |||||||||||| ||||  || ||||||||| |||| | ||| ||||||||||||| |||||||| ||||||| ||||    
T  2626581 cgtacaatacaccaaatgatgggaccccttcccagaccctgcatatgcgggagcttcagtgcaccagattgccctttg 2626658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 16013513 - 16013581
Alignment:
Q  18 cgtacaatacactaaata--gtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||||||||| |  ||| ||||||||| |||| | ||| ||||||||||||||||||||||||    
T  16013513 cgtacaatacactaaaaatggtgcgaccccttcccagaccctgcctatgcgggagctttagtgcaccgg 16013581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 18164797 - 18164760
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgccattt 94  Q
    |||||||||||||||||||||||||||| |||||||||    
T  18164797 tgcgtatgcgggagctttagtgcaccgggttgccattt 18164760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 13160760 - 13160832
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||||||||||||||||| ||||| |||| |||||    
T  13160760 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcttcagtgcgccgggttgcc 13160832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 28817702 - 28817630
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||||  ||| ||| ||||||||| | || | |||||||||||||||||||||||| ||| |||||    
T  28817702 cgtacaatacacccaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcatcgggttgcc 28817630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 29877153 - 29877217
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    |||||||||||| |||| ||| ||||||||| | || | ||||||||||||||| ||||||||||    
T  29877153 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcgttagtgcacc 29877217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 31457231 - 31457303
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||  |||| ||  ||||||||| || | | |||||||||||||||| |||||||||||||||||    
T  31457231 cgtacaatacatcaaatggtaggaccccttcccaaaccctgcgtatgcgggagctctagtgcaccggattgcc 31457303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 36720855 - 36720919
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    |||||||||||| |||| ||| ||||||||| | || | ||||||||||| ||||||||||||||    
T  36720855 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcggaagctttagtgcacc 36720919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 10857925 - 10857960
Alignment:
Q  55 cttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||||| |||||    
T  10857925 cttgcgtatgcgggagctttagtgcaccgggttgcc 10857960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 8484014 - 8483948
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||||| || | ||| |||||| || |||| | |||||||||||||||||||| |||||||    
T  8484014 cgtacaatacaccaattggtgggaccccatcccagaccctgcgtatgcgggagctttagggcaccgg 8483948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 12670326 - 12670260
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| |||||||||||    
T  12670326 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgg 12670260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 26102578 - 26102648
Alignment:
Q  20 tacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  26102578 tacaatacaccaaatggtgggaccccttcccggaccctgcttatgcgggagctctagtgcaccgggttgcc 26102648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 8897841 - 8897776
Alignment:
Q  17 acgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    ||||||||||||| |||| ||| ||||||||| | || | ||| ||||||||||||||| ||||||    
T  8897841 acgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctttactgcacc 8897776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 27468129 - 27468096
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||    
T  27468129 tgcgtatgcgggagctttagtgcaccgggttgcc 27468096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 30454173 - 30454101
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||| |||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  30454173 cgtacgatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 30454101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 9671238 - 9671310
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  9671238 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 9671310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 10546222 - 10546294
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  10546222 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 10546294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 11514495 - 11514566
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||| ||| |||| | ||||||||||||||||||||||||||||||||||    
T  11514495 cgtacaatacaccaaatggtgggaccc-ttcccagaccctgcgtatgcgggagctttagtgcaccggattgcc 11514566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 24860064 - 24859992
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||   |||||||||| || | ||||||||||||||||||||||||||||||||||    
T  24860064 cgtacaatacaccaaatggtagaaccccttctcggaccctgcgtatgcgggagctttagtgcaccggattgcc 24859992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 8455392 - 8455320
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||||||||| |||||||||||||||||| |||||    
T  8455392 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgccggagctttagtgcaccgggttgcc 8455320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 36871551 - 36871622
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || || ||||||||||||||||||||||||||| |||||    
T  36871551 cgtacaatacaccaaatggtgggaccccttcccggacct-gcgtatgcgggagctttagtgcaccgggttgcc 36871622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 25641560 - 25641630
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattg 88  Q
    |||||||||||| |||| ||| ||||||||| |  ||| |||||||||| ||||||||||| |||||||||    
T  25641560 cgtacaatacaccaaattgtgggaccccttcccgaatcctgcgtatgcgagagctttagtgaaccggattg 25641630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 23397822 - 23397895
Alignment:
Q  17 acgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||||| |||| ||| ||||||||||| || | | | |||||||||||| ||||||||||| |||||    
T  23397822 acgtacaatacaccaaatggtgggaccccttctcggaccctacatatgcgggagctctagtgcaccgggttgcc 23397895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 99341 - 99281
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtg 78  Q
    |||||||||||| |||| |||  ||||||||||||| | || |||||||||||||||||||    
T  99341 cgtacaatacaccaaatggtggaaccccttctcagaccctgtgtatgcgggagctttagtg 99281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 10543772 - 10543836
Alignment:
Q  31 aaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttg 95  Q
    |||| ||| ||||||||| | || | |||||||||||||||||||||||||||| ||||| ||||    
T  10543772 aaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgccctttg 10543836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 14530376 - 14530451
Alignment:
Q  17 acgtacaatacactaa--atagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||||| ||  || ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  14530376 acgtacaatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 14530451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 21779337 - 21779265
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  21779337 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 21779265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 14444788 - 14444851
Alignment:
Q  19 gtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    |||| |||||| |||| ||| ||||||||| | || | ||||||||||||||||||||||||||    
T  14444788 gtacgatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcacc 14444851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 19977790 - 19977707
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttgttaata 101  Q
    |||||||||||| |||| ||| || |||||| |  | |||| ||||||||||||||||||||||| |||| || ||| ||||||    
T  19977790 cgtacaatacaccaaatggtgggatcccttcccgaaccttgtgtatgcgggagctttagtgcaccagattacccttttttaata 19977707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 25079793 - 25079714
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttgtt 97  Q
    ||||||||||||  ||| ||| ||||||||| | || | |||||||||  ||||||||||||||||| ||||| ||||||    
T  25079793 cgtacaatacaccgaatggtgggaccccttcccggaccctgcgtatgcaagagctttagtgcaccgggttgccctttgtt 25079714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 124951 - 124913
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgccatttg 95  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  124951 tgcgtatgcgggagctttagtgcaccgggttgccttttg 124913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 17896319 - 17896381
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgca 80  Q
    ||||||||| || |||| ||| ||||||||||| || | |||||||| |||||||||||||||    
T  17896319 cgtacaatataccaaatggtgggaccccttctcggaccctgcgtatgtgggagctttagtgca 17896381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 26684696 - 26684626
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattg 88  Q
    ||||||||| ||||||| ||| |||| |||| |  | | ||||||||||||||||||| ||||||||||||    
T  26684696 cgtacaatatactaaatggtgggacctcttcccgaaccctgcgtatgcgggagctttaatgcaccggattg 26684626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 39499306 - 39499236
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattg 88  Q
    |||||||||||  |||| ||| || ||||| ||  ||| |||||||||||||||||||||||||| |||||    
T  39499306 cgtacaatacatcaaatggtgggatcccttttcgaatcctgcgtatgcgggagctttagtgcaccagattg 39499236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 40762311 - 40762233
Alignment:
Q  17 acgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttg 95  Q
    ||||||||||||| |||| ||| ||||| |||   || | |||||||| ||||||||||||||||||| ||||| ||||    
T  40762311 acgtacaatacaccaaatggtgggaccctttcctggaccctgcgtatgtgggagctttagtgcaccgggttgccctttg 40762233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 44643582 - 44643648
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    ||||||||  || |||| ||| ||||||||| |||| | ||||||||||||||| ||||||||||||    
T  44643582 cgtacaatgtaccaaatggtgggaccccttcccagaccctgcgtatgcgggagccttagtgcaccgg 44643648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 22371210 - 22371243
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||    
T  22371210 tgcgtatgcgggagctttagtgcaccgggttgcc 22371243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 25632568 - 25632645
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttg 95  Q
    |||||||||||| |||| ||| ||  ||||| |  | ||| |||||||||||||||||||||||||| ||||| ||||    
T  25632568 cgtacaatacaccaaatggtgggattccttcccgaaccttacgtatgcgggagctttagtgcaccgggttgccctttg 25632645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 31158502 - 31158445
Alignment:
Q  31 aaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattg 88  Q
    |||| ||| ||||||||| |||| | ||||||||||||||||||||| |||| |||||    
T  31158502 aaatggtgggaccccttcccagaccctgcgtatgcgggagctttagtacacctgattg 31158445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 17668061 - 17668133
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| |||  ||||||||||  | | |||||||  ||||||||||||||||||| |||||    
T  17668061 cgtacaatacaccaaatggtggaaccccttctcgaaccctgcgtatatgggagctttagtgcaccgggttgcc 17668133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 25249814 - 25249742
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| || |||||| |  | | |||||||||| ||||||||||||||||| |||||    
T  25249814 cgtacaatacaccaaatggtgggatcccttcccgaaccctgcgtatgcgtgagctttagtgcaccgggttgcc 25249742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 32781364 - 32781308
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagcttt 74  Q
    |||||||||||| |||| ||| ||||||||| |||| | || |||||||||||||||    
T  32781364 cgtacaatacaccaaatggtgggaccccttcccagaccctgtgtatgcgggagcttt 32781308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 16957374 - 16957445
Alignment:
Q  19 gtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||| |||| ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  16957374 gtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 16957445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 7097836 - 7097772
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    |||||||||||| |||| ||||||||||||| |  | | ||||||||||||||||||||||||||    
T  7097836 cgtacaatacaccaaatggtgagaccccttcccgaaccctgcgtatgcgggagctttagtgcacc 7097772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 24448949 - 24449021
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||||||||| |||||||||||||||||| |||||    
T  24448949 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcaggagctttagtgcaccgggttgcc 24449021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 25622541 - 25622596
Alignment:
Q  40 gaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttg 95  Q
    ||||||||| | || | |||||||||||||||||||||||||||||||||| ||||    
T  25622541 gaccccttcccggaccctgcgtatgcgggagctttagtgcaccggattgccctttg 25622596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 16880723 - 16880657
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||||| |||| ||| |||| |||| | || | ||||||||||||||||||||||||||||    
T  16880723 cgtacaatacaccaaatggtgtgaccacttcccggaccatgcgtatgcgggagctttagtgcaccgg 16880657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 39801597 - 39801651
Alignment:
Q  40 gaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccattt 94  Q
    ||||||||| |||| | | |||||||||||||||||||||||||| |||||||||    
T  39801597 gaccccttcccagaccctacgtatgcgggagctttagtgcaccgggttgccattt 39801651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 32703481 - 32703553
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  32703481 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 32703553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 38879640 - 38879714
Alignment:
Q  18 cgtacaatacactaa--atagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| ||  || ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  38879640 cgtacaatacaccaataatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 38879714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 29184111 - 29184065
Alignment:
Q  44 ccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||| ||||| | |||||||||||||||||||||||||||| |||||    
T  29184111 ccttgtcagaccatgcgtatgcgggagctttagtgcaccgggttgcc 29184065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 43574665 - 43574731
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    ||||||||| || |||| ||| ||||||||| | || | |||||||||||||||||||| |||||||    
T  43574665 cgtacaatataccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagagcaccgg 43574731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 8170060 - 8169988
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||| || |||||||||| |||||    
T  8170060 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagtttcagtgcaccgggttgcc 8169988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 34154890 - 34154818
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| ||||||| |||| ||||||||||| |||||    
T  34154890 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcggtagctctagtgcaccgggttgcc 34154818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 35710374 - 35710442
Alignment:
Q  22 caatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  35710374 caatacaccaaatggtgggaccccttcccggaacatgcatatgcgggagctctagtgcaccgggttgcc 35710442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 13100 - 13028
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||||  ||| ||| ||||||||| |||| | |||||||||||| ||||||||||||||| |||||    
T  13100 cgtacaatacaccgaatggtgggaccccttcccagaccctgcgtatgcgggggctttagtgcaccgggttgcc 13028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 24209 - 24137
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| |||||||||||||||||    
T  24209 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccggattgcc 24137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 30639438 - 30639510
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||||||||||||| | || | ||| ||||||||||||||||||||| || |||||    
T  30639438 cgtacaatacaccaaatggtgagaccccttcccggaccctgcatatgcgggagctttagtgcactgggttgcc 30639510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 40915887 - 40915959
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| || |||||| | || | ||||||||||||||||| ||||||||||||||||    
T  40915887 cgtacaatacaccaaatggtgggagcccttcccggaccctgcgtatgcgggagcttcagtgcaccggattgcc 40915959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 41018871 - 41018807
Alignment:
Q  17 acgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcac 81  Q
    ||||||||||||| |||||||| ||||||||| |||| ||||||||||  || ||||||||||||    
T  41018871 acgtacaatacaccaaatagtgggaccccttcccagaccttgcgtatggaggggctttagtgcac 41018807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 14983895 - 14983953
Alignment:
Q  20 tacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtg 78  Q
    ||||||||||||||| ||| ||||||||| | || | ||||||||||||||||||||||    
T  14983895 tacaatacactaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 14983953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 20225041 - 20225118
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgccatttg 95  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| ||||| ||||    
T  20225041 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgccctttg 20225118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 20639735 - 20639662
Alignment:
Q  18 cgtacaatacactaaa-tagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| ||| | ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  20639735 cgtacaatacaccaaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 20639662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 5648317 - 5648389
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||||||||||||||||| ||||||| || |||||    
T  5648317 cgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcttcagtgcactgggttgcc 5648389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 6430702 - 6430630
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| |||| |||| | || | |||||||||||||||||||| ||||||| |||||    
T  6430702 cgtacaatacaccaaatggtgggaccacttcccggaccctgcgtatgcgggagctttagcgcaccgggttgcc 6430630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 10277833 - 10277761
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| |||| |||||||| |||| | ||| |||||||||| | ||||| |||||||||||    
T  10277833 cgtacaatacaccaaatggtgaaaccccttcccagaccctgcatatgcgggagttctagtgaaccggattgcc 10277761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 12711525 - 12711461
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    |||||||||||| |||| | | |||||||||||||| || |||||||||| | ||||||||||||    
T  12711525 cgtacaatacaccaaatggcgggaccccttctcagacctagcgtatgcggaaactttagtgcacc 12711461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 29207974 - 29207902
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  29207974 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 29207902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 30352643 - 30352591
Alignment:
Q  31 aaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccg 83  Q
    |||| ||| ||||||||||| || | |||||||||||||||||||||||||||    
T  30352643 aaatggtgggaccccttctcggaccctgcgtatgcgggagctttagtgcaccg 30352591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 51865114 - 51865042
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| | ||||||| | || | ||||||||||||||||||| ||||||||| ||||    
T  51865114 cgtacaatacaccaaatggtggggccccttcccggaccctgcgtatgcgggagctttattgcaccggactgcc 51865042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 25629109 - 25629180
Alignment:
Q  19 gtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||||| |||| ||| ||||||||| | || | | | |||||||||||||||||||||||| |||||    
T  25629109 gtacaatacaccaaatggtgggaccccttcccggaccctacatatgcgggagctttagtgcaccgggttgcc 25629180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 44363193 - 44363134
Alignment:
Q  31 aaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||| ||| ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  44363193 aaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 44363134  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 48033422 - 48033457
Alignment:
Q  55 cttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||||    
T  48033422 cttgcgtatgcgggagctttagtgcacctgattgcc 48033457  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 19425922 - 19425956
Alignment:
Q  56 ttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||| ||||||||||||    
T  19425922 ttgcgtatgcgggagctttagtacaccggattgcc 19425956  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 30690250 - 30690188
Alignment:
Q  20 tacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    |||||||||| || | ||| ||||||||| | || | ||||||||||||||||||||||||||    
T  30690250 tacaatacaccaattggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcacc 30690188  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 34257034 - 34256992
Alignment:
Q  42 ccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||||| |||||  |||||||||||||||||||||||    
T  34257034 ccccttctcagaccttgcacatgcgggagctttagtgcaccgg 34256992  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 38755962 - 38755912
Alignment:
Q  40 gaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  38755962 gaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 38755912  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 40553991 - 40553941
Alignment:
Q  40 gaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    ||||||||| | || | |||||||||||||||||||||||||||| |||||    
T  40553991 gaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcc 40553941  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 55766542 - 55766476
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    ||||||||||||| ||| |||  ||||| || | || |||||||||||| |||||||||||||||||    
T  55766542 cgtacaatacactgaatggtggaaccccatcccggaccttgcgtatgcgagagctttagtgcaccgg 55766476  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 11394950 - 11394983
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||    
T  11394950 tgcgtatgcgggagctttagtgcaccgggttgcc 11394983  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 11404677 - 11404710
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||    
T  11404677 tgcgtatgcgggagctttagtgcaccgggttgcc 11404710  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 28494223 - 28494276
Alignment:
Q  31 aaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||| ||| ||||||||| |||||| ||| |||||||||||| |||||||||||    
T  28494223 aaatggtgggaccccttcccagatcctgcatatgcgggagctctagtgcaccgg 28494276  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 35532090 - 35532123
Alignment:
Q  57 tgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||||||||||||||||||| |||||    
T  35532090 tgcgtatgcgggagctttagtgcaccgggttgcc 35532123  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 2813225 - 2813265
Alignment:
Q  57 tgcgtatgcgggagcttt-agtgcaccggattgccatttgt 96  Q
    |||||||||||||||||| |||||||||||||||| |||||    
T  2813225 tgcgtatgcgggagctttaagtgcaccggattgccctttgt 2813265  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 9987908 - 9987844
Alignment:
Q  20 tacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccgg 84  Q
    |||||||||| |||| ||| |||||||||   || ||||| ||||||||||||||| ||||||||    
T  9987908 tacaatacaccaaatggtgggaccccttccttgaccttgcatatgcgggagctttaatgcaccgg 9987844  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 48598901 - 48598829
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| ||||| |||||| ||||||||||| |||||    
T  48598901 cgtacaatacaccaaatggtgggaccccttcccggaccatgcatatgccggagctctagtgcaccgggttgcc 48598829  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 55830797 - 55830733
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcacc 82  Q
    ||||||||||||| ||| |||  ||||| || | || |||||||||||| |||||||||||||||    
T  55830797 cgtacaatacactgaatggtggaaccccatcccggaccttgcgtatgcgagagctttagtgcacc 55830733  T

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Target: scaffold0168 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 30636 - 30708
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  30636 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 30708  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 48710 - 48638
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||| ||| ||||||||| | || | ||| |||||||||||| ||||||||||| |||||    
T  48710 cgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcc 48638  T

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Target: scaffold0311 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 10873 - 10932
Alignment:
Q  22 caatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcac 81  Q
    |||||||| |||| ||| ||||||||| | || | |||||||||||||||||||||||||    
T  10873 caatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcac 10932  T

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Target: scaffold0187 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 10126 - 10054
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||||||| ||||||||| | || | ||| ||||| ||||||  |||||||||| |||||    
T  10126 cgtacaatacaccaaatagtgggaccccttcccggaccctgcatatgcaggagctccagtgcaccgggttgcc 10054  T

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Target: scaffold0187; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 20454 - 20382
Alignment:
Q  18 cgtacaatacactaaatagtgagaccccttctcagatcttgcgtatgcgggagctttagtgcaccggattgcc 90  Q
    |||||||||||| |||||||| ||||||||| | || | ||| ||||| ||||||  |||||||||| |||||    
T  20454 cgtacaatacaccaaatagtgggaccccttcccggaccctgcatatgcaggagctccagtgcaccgggttgcc 20382  T

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