View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_16 (Length: 366)
Name: NF9319_low_16
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 4751257 - 4751608
Alignment:
| Q |
1 |
caaaattgaacaccattatttgaaaacatagtttgtatgctatcttagccaagatttctttagtgaagaattctttcactggcgagtgaggacttccact |
100 |
Q |
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| T |
4751257 |
caaaattgaacaccattatttgaaaacatagtttgtatgctatcttagccaagttttctttagtgaagaattctttcactggcgagtgaggacttccact |
4751356 |
T |
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| Q |
101 |
gctaagttttctatatctccattttctctcttgaagcaaacaggagaaaacttcaatttcctcccagtttctcttgtatcaaacaatgtgttagtgaata |
200 |
Q |
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| T |
4751357 |
gctaagttttctatatctccattttctctcttgaagcaaacaggagaaaacttcaatttcctcccagtttctcttgtatcaaacaatgtgttagtgaata |
4751456 |
T |
|
| Q |
201 |
aaataaacatgcaagtcttaattgtgctatggattctaggcagcactaagcatcaaatggatccagaaagaaataagtatcactgtggtttgttctaaca |
300 |
Q |
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| T |
4751457 |
aaataaacatgcaagtcttaattgtgctatggattctaggcagcactaagcatcaaatggatccagaaagaaataagtatcaccgtggtttgttctaacg |
4751556 |
T |
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| Q |
301 |
taatgtcttaaatttttatcatttccaagtaccacaaagcaccgcatttgat |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4751557 |
taatgtcttaaatttttatcatttccaagtaccacaaagcaccgcatttgat |
4751608 |
T |
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