View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_19 (Length: 340)
Name: NF9319_low_19
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 35 - 324
Target Start/End: Original strand, 3929516 - 3929807
Alignment:
| Q |
35 |
aatactatgttgaaaatgagaagtcttgaaaccaatcttactatgtagtattttttaataatagata--catgtacaatgttgtttctcaataaaattta |
132 |
Q |
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| T |
3929516 |
aatactatgttgaaaatgagaagtcttgaaaccaatcttactatgtagtattttttaataatagatatacatgcacaatgttgtttctcaataaaaatta |
3929615 |
T |
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| Q |
133 |
aaagattttaaattaaacatgtcagtctacctatcaaccactatcttagagataagctcaaacttagcattgttaatatgtaagtctttaacccatctga |
232 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3929616 |
aaagattttaaattaaacatgtccgtctacctatcaaccactatcttagagttaagctcaaacttagcattgttaatatgtaagtctttaacccatctga |
3929715 |
T |
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| Q |
233 |
tagcgcatagtaaccttaaatcaacactggtcacaagcaagacccactcattttgtttccaaaacaaagatcacttaatcatccgaacaagg |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3929716 |
tagcgcatagtaaccttaaatcaacactggtcacaagcaagacccactcattttgtttccaaaacaaagatcacttaatcatccgaacaagg |
3929807 |
T |
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