View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_20 (Length: 338)
Name: NF9319_low_20
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 48876574 - 48876321
Alignment:
| Q |
1 |
catcatagtacctatgcttctcattcccctcgttttatctacattccagatgacaccatagataagaaattcatatgtatgtcagcttcaattaagaata |
100 |
Q |
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| T |
48876574 |
catcatagtacctatgcttctcattcccctcgttttatctacattccagatgacaccatagataggaaattcatatgtatgtcagcttcaattaagaata |
48876475 |
T |
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| Q |
101 |
ttggaatctaatcaatgaagtttgtattgaagtaatgagaaaactgttgagtaaatacatgcatgttcaagtgctaaactaagatgagttaattggggtt |
200 |
Q |
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| T |
48876474 |
ttggaatctaatcaatgaagtttgtattgaagtaatgagaaaactgttgagtaaatacatgcatgttcaagtgctaaactaagatgagttaattggggtt |
48876375 |
T |
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| Q |
201 |
cggtaacgtcctattgttccctaagcagcctatgacgtcccattgttacctagc |
254 |
Q |
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| T |
48876374 |
cggtaacgtcctattgttccctaagcagcctataacatcccattgttacctagc |
48876321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 48922726 - 48922765
Alignment:
| Q |
153 |
aaatacatgcatgttcaagtgctaaactaagatgagttaa |
192 |
Q |
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| T |
48922726 |
aaatatatacatgttcaagtgctaaactaagatgagttaa |
48922765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 9726827 - 9726756
Alignment:
| Q |
164 |
tgttcaagtgctaaactaagatgagttaattggggttcggtaacgtcctattgttccctaagcagcctatga |
235 |
Q |
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| T |
9726827 |
tgttgaagtggtaaactaagatgagttaattggggctcagttacatcacattgttccctatgcagcctatga |
9726756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 3759183 - 3759234
Alignment:
| Q |
59 |
tagataagaaattcatatgtatgtcagcttcaattaagaatattggaatctaat |
112 |
Q |
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|||||||||||||||||||| | ||||| ||||||||||||||||||||||| |
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| T |
3759183 |
tagataagaaattcatatgt--gatagcttgaattaagaatattggaatctaat |
3759234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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