View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_21 (Length: 337)
Name: NF9319_low_21
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 6353669 - 6353356
Alignment:
| Q |
18 |
aaaagagcatcaaatcttttttcctaataaatctgcactggagttggtctctctgaaacaatgttgaatggtggcgaggtcacaaaccctccacctcgcc |
117 |
Q |
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| T |
6353669 |
aaaagagcatcaaatcttttttcctaataaatctgcacgggagttggtctctctgaaacaatgttgaatggtggcgaggtcacaaaccctccacctcgcc |
6353570 |
T |
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| Q |
118 |
acctcttcactacaaagatcttatggtaaatgctttgctaaacccgggtctgaattcttggaacattcctgtcatacaaaatctgtttgatgctactgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353569 |
acctcttcactacaaagatcttatggtaaatgctttgctaaacccgggtctgaattcttggaacattcctgtcatacaaaatctgtttgatgctactgat |
6353470 |
T |
|
| Q |
218 |
gtaaccacaattctgtccattccactatttgctcgatcaagaactgattctcgaatctggaagtcaacggtgggtggagcttatactgtcaaaacagctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353469 |
gtaaccacaattctgtccattccactatttgctcgatcaagaactgattctcgaatctggaagtcaacggtgggtggagcttatactgtcaaaacagctt |
6353370 |
T |
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| Q |
318 |
accgtctctgctcc |
331 |
Q |
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|||||||||||||| |
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| T |
6353369 |
accgtctctgctcc |
6353356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 241
Target Start/End: Complemental strand, 23601262 - 23601120
Alignment:
| Q |
98 |
cacaaaccctccacctcgccacctcttcactacaaagatcttatggtaaatgctttgctaaacccgggtctgaattcttggaacattcctgtcatacaaa |
197 |
Q |
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| T |
23601262 |
cacaaaccctcaaccttgccacctcttcactataaatatcttacggtaa-tgctttgctaaacccgagtctgaattcttggaacatttctgtcatacaaa |
23601164 |
T |
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| Q |
198 |
atctgtttgatgctactgatgtaaccacaattctgtccattcca |
241 |
Q |
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| T |
23601163 |
atttgtttgatgctattgatgtaacagaaattctgtccattcca |
23601120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 23601121 - 23601072
Alignment:
| Q |
282 |
caacggtgggtggagcttatactgtcaaaacagcttaccgtctctgctcc |
331 |
Q |
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||||||||| ||||| |||||||||||||||| |||| ||||||||||| |
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| T |
23601121 |
caacggtggatggagtttatactgtcaaaacaacttattgtctctgctcc |
23601072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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