View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_22 (Length: 336)
Name: NF9319_low_22
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 42198448 - 42198128
Alignment:
| Q |
1 |
gctagaaacaaatttagtggctcgattccaaatagtctaggggatttagcatcacttgtgactttggatctat-catcaaacaatctcactggtctaatt |
99 |
Q |
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| T |
42198448 |
gctagaaacaaatttagtggctcaattccaaatagtctaggggatttagcatcacttgtgactttggatctattcatcaaacaatctcactggtctaatt |
42198349 |
T |
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| Q |
100 |
cctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacctaa |
199 |
Q |
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| T |
42198348 |
cctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacctaa |
42198249 |
T |
|
| Q |
200 |
gctaggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagtcaagttatgcacaagttgggagtaactttgtatgttgcaggtaaaaaa |
299 |
Q |
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| T |
42198248 |
gctaggttgatctccaaggtaacaacaaactatgcggccttaacaatc-----aagttatgcacaagttgggagtaactttgtatgttgcaggtaaaaaa |
42198154 |
T |
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| Q |
300 |
cacaagagaaacattttactccctat |
325 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
42198153 |
cacaagagaaacattttactccctat |
42198128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 325
Target Start/End: Complemental strand, 42211020 - 42210704
Alignment:
| Q |
4 |
agaaacaaatttagtggctcgattccaaatagtctaggggatttagcatcacttgtgactttggatctatcatcaaacaatctcactggtctaattcctg |
103 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||| ||| |||| |
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| T |
42211020 |
agaaacaattttagtggctcaattccaaatagtctaggggatttgccatcccttgtgactttagatctatcatcaaacagtctcactggtccaatccctg |
42210921 |
T |
|
| Q |
104 |
atagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacctaagcta |
203 |
Q |
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| T |
42210920 |
agagtttagaaaagctcaagtatatggtgaaattaaatttgtccttcaacaaattggaaggggaagttcctatggaaggtatttttatgaacctaagcca |
42210821 |
T |
|
| Q |
204 |
ggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagtcaagttatgcacaagttgggagtaactttgtatgttgcaggtaaaaaacaca |
303 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||| ||| ||| |
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| T |
42210820 |
ggttgatctccaaggtaacaacaaactatgtggccttaacaatc-----aagttatgcacaagttaggagtcactttgtgtgttgcaggtaagaaaaaca |
42210726 |
T |
|
| Q |
304 |
agagaaacattttactccctat |
325 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
42210725 |
agagaaacattttactacctat |
42210704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 42223236 - 42222989
Alignment:
| Q |
4 |
agaaacaaatttagtggctcgattccaaatagtctaggggatttagcatcacttgtgactttggatctatcatcaaacaatctcactggtctaattcctg |
103 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| | |
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| T |
42223236 |
agaaacaattttagtggctcaattccaaatagtctaggtgatttagcatcccttgtgactttagatctatcatcaaacaatctcactggttcaattcccg |
42223137 |
T |
|
| Q |
104 |
atagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacattcctatgaaaggtgtttttatgaacctaagcta |
203 |
Q |
| |
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|||||||||||||| ||||||||| ||| |||||||||||| |||||| | |||||||| || |||||||| |||| |||||||||||||||||| | |
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| T |
42223136 |
tgagtttagaaaagcttgagtatatgatgaaattaaatttgtccttcaacaaattggaaggggaagttcctatggaaggcgtttttatgaacctaagcca |
42223037 |
T |
|
| Q |
204 |
ggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagt |
251 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||||||||| |||| |
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| T |
42223036 |
ggttgatatccaaggtaacaacaaactatgtggccttaacaatgaagt |
42222989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 72 - 325
Target Start/End: Original strand, 33700929 - 33701177
Alignment:
| Q |
72 |
atcatcaaacaatctcactggtctaattcctgatagtttagaaaagctggagtatatggtgagattaaatttgtctttcaacgacttggaaggagacatt |
171 |
Q |
| |
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||||||||||||||||||||||| |||||| | |||||||||||||| ||||||||| ||| |||||||||||| |||||| | |||||||| || || |
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| T |
33700929 |
atcatcaaacaatctcactggtccaattcccgtgagtttagaaaagcttgagtatatgatgaaattaaatttgtccttcaacaaattggaaggggaagtt |
33701028 |
T |
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| Q |
172 |
cctatgaaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgcggccttaacaatcaagtcaagttatgcacaagttggg |
271 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||| |||||||| || |
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| T |
33701029 |
cctatggaaggtgtttttatgaacctaagctaggttgatctccaaggtaacaacaaactatgtggcgttaacaa-----tgaagttacccacaagttagg |
33701123 |
T |
|
| Q |
272 |
agtaactttgtatgttgcaggtaaaaaacacaagagaaacattttactccctat |
325 |
Q |
| |
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||| ||||||| ||||||| ||| ||| |||| | |||||||||||| ||||| |
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|
| T |
33701124 |
agtcactttgtgtgttgcatctaagaaaaacaaaacaaacattttactacctat |
33701177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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