View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9319_low_24 (Length: 335)

Name: NF9319_low_24
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9319_low_24
NF9319_low_24
[»] chr3 (16 HSPs)
chr3 (18-322)||(27771855-27772159)
chr3 (134-317)||(26146623-26146806)
chr3 (135-317)||(18082639-18082821)
chr3 (134-311)||(26118625-26118802)
chr3 (229-328)||(28077886-28077985)
chr3 (219-289)||(27465889-27465959)
chr3 (229-328)||(27908277-27908376)
chr3 (229-328)||(28176509-28176608)
chr3 (127-185)||(28078029-28078087)
chr3 (229-328)||(28514867-28514966)
chr3 (219-289)||(18724861-18724931)
chr3 (133-167)||(28176670-28176704)
chr3 (133-169)||(11407435-11407471)
chr3 (133-169)||(17750775-17750811)
chr3 (133-169)||(19052095-19052131)
chr3 (209-289)||(27368811-27368891)
[»] scaffold0067 (1 HSPs)
scaffold0067 (229-328)||(22447-22546)
[»] scaffold0043 (1 HSPs)
scaffold0043 (207-317)||(74658-74768)
[»] chr7 (1 HSPs)
chr7 (133-169)||(8696120-8696156)
[»] chr4 (2 HSPs)
chr4 (125-169)||(9331690-9331734)
chr4 (125-169)||(9385473-9385517)
[»] scaffold0912 (1 HSPs)
scaffold0912 (242-317)||(612-687)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 27772159 - 27771855
Alignment:
Q  18 ccttaaactgctggtgatcactgatattgctagtggtaatcttttgcattcatttgaaatagcacgtgccttatgaagaaaacttctagacatatcatca 117  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27772159 ccttaaactgctggcgataactgatattgctagtggtaatcttttgcattcatttgaaatagcacgtgccttgtgaagaaaacttctagacatatcatca 27772060  T
Q  118 cttatagaagcatatcttttgaacatgatccatgcatcttcttcagataagatttccaattgaattgttcttcgacaaccattaatatcgcatacccgca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27772059 cttatagaagcatatcttttgaacatgatccatgcatcttcttcagataagatttccaattgaattgttcttcgacaaacattaatatcgcatacccgca 27771960  T
Q  218 aattgcatgtagttaaaagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaatcaattttttcccacacatcatctaatat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27771959 aattgcatgtagttaaaagaactctgcagcctttgtgattatcactatgtggaatccctatgccatcaaaatcaattttttcccacacatcatctaatat 27771860  T
Q  318 tagaa 322  Q
    |||||    
T  27771859 tagaa 27771855  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 134 - 317
Target Start/End: Original strand, 26146623 - 26146806
Alignment:
Q  134 ttttgaacatgatccatgcatcttcttcagataagatttccaattgaattgttcttcgacaaccattaatatcgcatacccgcaaattgcatgtagttaa 233  Q
    ||||||||||||||||||| |||||||||| |||||  || | |||||||||  ||| ||| ||  |  | | |||||||  || ||||| ||| ||||     
T  26146623 ttttgaacatgatccatgcgtcttcttcagttaagagctctagttgaattgtctttccacatcccattttgttgcatacctccagattgcgtgtggttac 26146722  T
Q  234 aagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaatcaattttttcccacacatcatctaatat 317  Q
    ||||||| |||| ||||||||||||||| ||| ||||||||||||| |||||||||  |  |||||||| |||||||| |||||    
T  26146723 aagaactttgcatcctttgtgattatcactatttggaatccctatgtcatcaaaattgagattttcccatacatcatccaatat 26146806  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 317
Target Start/End: Original strand, 18082639 - 18082821
Alignment:
Q  135 tttgaacatgatccatgcatcttcttcagataagatttccaattgaattgttcttcgacaa-ccattaatatcgcatacccgcaaattgcatgtagttaa 233  Q
    |||||||| ||||||||| |||||||||  |||||| || | |||||||||  ||  |||| |||||  | | |||||||  || ||||| ||| ||||     
T  18082639 tttgaacaagatccatgcctcttcttcatctaagatatcaagttgaattgtctttttacaagccattttttt-gcatacctccagattgcgtgtggttac 18082737  T
Q  234 aagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaatcaattttttcccacacatcatctaatat 317  Q
    ||||||| |||| | ||||||||| ||| ||| ||||||||||||| ||||||||||||  || ||||||||||||||||||||    
T  18082738 aagaactttgcatcgtttgtgattgtcactatttggaatccctatgacatcaaaatcaagattatcccacacatcatctaatat 18082821  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 134 - 311
Target Start/End: Original strand, 26118625 - 26118802
Alignment:
Q  134 ttttgaacatgatccatgcatcttcttcagataagatttccaattgaattgttcttcgacaacc-attaatatcgcatacccgcaaattgcatgtagtta 232  Q
    |||||||||||||| |||| |||||||||| |||||  |||| |||||||||  ||| ||| || |||  | |||||||||| ||| | || ||| ||||    
T  26118625 ttttgaacatgatcaatgcttcttcttcagttaagagctccagttgaattgtctttccacatcccatttgt-tcgcataccctcaattcgcgtgtggtta 26118723  T
Q  233 aaagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaatcaattttttcccacacatcatc 311  Q
     ||||||| |||| ||||| ||||||||| ||| ||||| ||||||| |||||||||  |  |||||||||||||||||    
T  26118724 caagaactttgcatcctttatgattatcactatttggaagccctatgtcatcaaaattgagattttcccacacatcatc 26118802  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 28077985 - 28077886
Alignment:
Q  229 gttaaaagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaatcaattttttcccacacatcatctaatattagaataatct 328  Q
    |||| ||||| ||| |||||| |||||||| || ||| ||||||||||||  |||||||||  || | | |||||||||||||||||||||||| |||||    
T  28077985 gttacaagaattctacagcctctgtgattaccactatctggaatccctatttcatcaaaattgatatctccccacacatcatctaatattagaagaatct 28077886  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 27465889 - 27465959
Alignment:
Q  219 attgcatgtagttaaaagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaat 289  Q
    ||||| ||| |||| ||||| ||| |||||||||||||||||| ||||||||||||||||  |||||||||    
T  27465889 attgcgtgtggttataagaattctacagcctttgtgattatcactatgtggaatccctatttcatcaaaat 27465959  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 27908376 - 27908277
Alignment:
Q  229 gttaaaagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaatcaattttttcccacacatcatctaatattagaataatct 328  Q
    |||| ||||| ||| |||||||||||||| ||| | | |||||| || ||  ||| ||||||||| ||| ||||||||||||| |||||||||| |||||    
T  27908376 gttataagaattctacagcctttgtgattgtcactgtatggaataccaatttcattaaaatcaatatttccccacacatcatccaatattagaagaatct 27908277  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 28176608 - 28176509
Alignment:
Q  229 gttaaaagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaatcaattttttcccacacatcatctaatattagaataatct 328  Q
    |||| ||||| ||| |||||||||||||| ||| | | ||||||||||||  ||| |||||| || | | ||||||||||||| |||||||||| |||||    
T  28176608 gttacaagaattctacagcctttgtgattgtcactgtatggaatccctatttcattaaaatcgatgtctccccacacatcatccaatattagaagaatct 28176509  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 28078087 - 28078029
Alignment:
Q  127 gcatatcttttgaacatgatccatgcatcttcttcagataagatttccaattgaattgt 185  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||  |||| |||||||||    
T  28078087 gcatgtctttcgaacatgatccatgcgtcttcttcagataagagatccagttgaattgt 28078029  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 328
Target Start/End: Original strand, 28514867 - 28514966
Alignment:
Q  229 gttaaaagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaatcaattttttcccacacatcatctaatattagaataatct 328  Q
    |||| ||||||| | |||||||||||||| ||| | | |||||| || ||  ||| ||||||||| | | ||||||||||||| |||||||||| |||||    
T  28514867 gttacaagaactatacagcctttgtgattgtcactgtatggaataccaatttcattaaaatcaatatctccccacacatcatccaatattagaagaatct 28514966  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 18724861 - 18724931
Alignment:
Q  219 attgcatgtagttaaaagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaat 289  Q
    ||||| ||| |||| ||| ||| |||| ||||||||||||||| | | ||||||||||||| |||||||||    
T  18724861 attgcgtgtggttacaagtactttgcatcctttgtgattatcactctttggaatccctatgtcatcaaaat 18724931  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 167
Target Start/End: Complemental strand, 28176704 - 28176670
Alignment:
Q  133 cttttgaacatgatccatgcatcttcttcagataa 167  Q
    |||||||||||||||||||| ||||||||||||||    
T  28176704 cttttgaacatgatccatgcgtcttcttcagataa 28176670  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 11407471 - 11407435
Alignment:
Q  133 cttttgaacatgatccatgcatcttcttcagataaga 169  Q
    |||| |||||||||||| |||||||||||||||||||    
T  11407471 ctttggaacatgatccacgcatcttcttcagataaga 11407435  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 17750775 - 17750811
Alignment:
Q  133 cttttgaacatgatccatgcatcttcttcagataaga 169  Q
    |||||||||||| |||| |||||||||||||||||||    
T  17750775 cttttgaacatggtccacgcatcttcttcagataaga 17750811  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 19052095 - 19052131
Alignment:
Q  133 cttttgaacatgatccatgcatcttcttcagataaga 169  Q
    |||||||||||| |||| |||||||||||||||||||    
T  19052095 cttttgaacatggtccacgcatcttcttcagataaga 19052131  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 27368891 - 27368811
Alignment:
Q  209 atacccgcaaattgcatgtagttaaaagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaat 289  Q
    |||||| || ||||| ||| |||| ||| | | |||| ||||||||||||||  ||| ||||||||||||| |||||||||    
T  27368891 ataccctcagattgcgtgtggttataagtaatttgcatcctttgtgattatctctatttggaatccctatgtcatcaaaat 27368811  T

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Target: scaffold0067 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 22546 - 22447
Alignment:
Q  229 gttaaaagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaatcaattttttcccacacatcatctaatattagaataatct 328  Q
    |||| ||||| ||| ||||||||||| || ||| ||| ||||||||||||  |||||||||| || | ||||||||||||||| |||||||||| |||||    
T  22546 gttacaagaattctacagcctttgtggttgtcactatatggaatccctatttcatcaaaatcgatatcttcccacacatcatccaatattagaagaatct 22447  T

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Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 74658 - 74768
Alignment:
Q  207 gcatacccgcaaattgcatgtagttaaaagaactctgcagcctttgtgattatcattatgtggaatccctatgccatcaaaatcaattttttcccacaca 306  Q
    |||||||| || ||||| ||| |||| ||| ||| |||| ||||||||||||||| | | ||||||||||||| |||||||||  |  ||| ||||||||    
T  74658 gcataccctcagattgcgtgtggttacaagtactttgcatcctttgtgattatcactctttggaatccctatgtcatcaaaattgagatttccccacaca 74757  T
Q  307 tcatctaatat 317  Q
    ||||| |||||    
T  74758 tcatccaatat 74768  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 8696120 - 8696156
Alignment:
Q  133 cttttgaacatgatccatgcatcttcttcagataaga 169  Q
    |||||||||||||||||||| ||||||||||||||||    
T  8696120 cttttgaacatgatccatgcgtcttcttcagataaga 8696156  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 9331690 - 9331734
Alignment:
Q  125 aagcatatcttttgaacatgatccatgcatcttcttcagataaga 169  Q
    ||||||| |||||||||||| |||| |||||||||||||||||||    
T  9331690 aagcataacttttgaacatggtccacgcatcttcttcagataaga 9331734  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 9385473 - 9385517
Alignment:
Q  125 aagcatatcttttgaacatgatccatgcatcttcttcagataaga 169  Q
    ||||||| |||||||||||| |||| |||||||||||||||||||    
T  9385473 aagcataacttttgaacatggtccacgcatcttcttcagataaga 9385517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 317
Target Start/End: Original strand, 612 - 687
Alignment:
Q  242 tgcagcctttgtgattatcattatgtggaatccctatgccatcaaaatcaattttttcccacacatcatctaatat 317  Q
    |||| ||||||||||||||| | | ||||||||||||| |||||||||  |  ||| ||||||||||||| |||||    
T  612 tgcatcctttgtgattatcactctttggaatccctatgtcatcaaaattgagatttccccacacatcatccaatat 687  T

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