View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_26 (Length: 333)
Name: NF9319_low_26
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 32387343 - 32387028
Alignment:
| Q |
1 |
gaactacaaccttttggatgcagtgagcaggcacacagtgcaagtgttccccaagtcatgggccgcaattatgttgacattcgacaacgctggtatgtgg |
100 |
Q |
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| T |
32387343 |
gaactacaaccttttggatgcagtgagcaggcacacagtgcaagtgttccccaagtcatgggccgcaattatgttgacattcgacaacgctggtatgtgg |
32387244 |
T |
|
| Q |
101 |
aacttgagatcagaaatggctgagaacaggtaccttggccaacaaatgtacatgagtgtgttgtcccctgaaaaatccaacagggatgagtacaatcttc |
200 |
Q |
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| T |
32387243 |
aacttgagatcagaaatggctgagaacaggtaccttggccaacaaatgtacatgagtgtgttgtcccctgaaaaatccaacagggatgagtacaatcttc |
32387144 |
T |
|
| Q |
201 |
cagatactcatcaagtctgcggcattgtcaaggatatgccaaggcctgcactacaatacacttaattttatcattcatgcattcaaagatgcatatatgg |
300 |
Q |
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| T |
32387143 |
cagatactcatcaagtctgcggcattgtcaaggatatgccaaggcctgcactacaatacacttaattttatcattcatgcattcaaagatgcatatatgg |
32387044 |
T |
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| Q |
301 |
gctggttttctttgat |
316 |
Q |
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| T |
32387043 |
gctggttttctttgat |
32387028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 32380965 - 32380822
Alignment:
| Q |
17 |
gatgcagtgagcaggcacacagtgcaagtgttccccaagtcatgggccgcaattatgttgacattcgacaacgctggtatgtggaacttgagatcagaaa |
116 |
Q |
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| T |
32380965 |
gatgctgtgagcagacacaccattcaagtatttccaaaatcatgggctgcaataatgttgtcattcgacaacgttggagtgtggaatttgaggtcagaga |
32380866 |
T |
|
| Q |
117 |
tggctgagaacaggtaccttggccaacaaatgtacatgagtgtg |
160 |
Q |
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| T |
32380865 |
ttgctgagaatcgttacttgggacaacaattgtacattagtgtg |
32380822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 37633991 - 37633881
Alignment:
| Q |
4 |
ctacaaccttttggatgcagtgagcaggcacacagtgcaagtgttccccaagtcatgggccgcaattatgttgacattcgacaacgctggtatgtggaac |
103 |
Q |
| |
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|||||||||||||||||| | ||||| |||||| | || |||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||| | |
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| T |
37633991 |
ctacaaccttttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaa |
37633892 |
T |
|
| Q |
104 |
ttgagatcaga |
114 |
Q |
| |
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||||| ||||| |
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| T |
37633891 |
ttgaggtcaga |
37633881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 37639819 - 37639709
Alignment:
| Q |
4 |
ctacaaccttttggatgcagtgagcaggcacacagtgcaagtgttccccaagtcatgggccgcaattatgttgacattcgacaacgctggtatgtggaac |
103 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||| | || |||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||| | |
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| T |
37639819 |
ctacaaccttttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaa |
37639720 |
T |
|
| Q |
104 |
ttgagatcaga |
114 |
Q |
| |
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||||| ||||| |
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| T |
37639719 |
ttgaggtcaga |
37639709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 37645193 - 37645083
Alignment:
| Q |
4 |
ctacaaccttttggatgcagtgagcaggcacacagtgcaagtgttccccaagtcatgggccgcaattatgttgacattcgacaacgctggtatgtggaac |
103 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||| | || |||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||| | |
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| T |
37645193 |
ctacaaccttttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaa |
37645094 |
T |
|
| Q |
104 |
ttgagatcaga |
114 |
Q |
| |
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||||| ||||| |
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| T |
37645093 |
ttgaggtcaga |
37645083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 37648106 - 37647996
Alignment:
| Q |
4 |
ctacaaccttttggatgcagtgagcaggcacacagtgcaagtgttccccaagtcatgggccgcaattatgttgacattcgacaacgctggtatgtggaac |
103 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||| | || |||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||| | |
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| T |
37648106 |
ctacaaccttttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaa |
37648007 |
T |
|
| Q |
104 |
ttgagatcaga |
114 |
Q |
| |
|
||||| ||||| |
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|
| T |
37648006 |
ttgaggtcaga |
37647996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 37651018 - 37650908
Alignment:
| Q |
4 |
ctacaaccttttggatgcagtgagcaggcacacagtgcaagtgttccccaagtcatgggccgcaattatgttgacattcgacaacgctggtatgtggaac |
103 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||| | || |||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||| | |
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| T |
37651018 |
ctacaaccttttggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaa |
37650919 |
T |
|
| Q |
104 |
ttgagatcaga |
114 |
Q |
| |
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||||| ||||| |
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| T |
37650918 |
ttgaggtcaga |
37650908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 37636905 - 37636795
Alignment:
| Q |
4 |
ctacaaccttttggatgcagtgagcaggcacacagtgcaagtgttccccaagtcatgggccgcaattatgttgacattcgacaacgctggtatgtggaac |
103 |
Q |
| |
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|||||||||| ||||||| | ||||| |||||| | || |||||||| || |||||||| ||||| ||||||||||||||||| |||||||||||| | |
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| T |
37636905 |
ctacaaccttctggatgccatcagcagacacacaattcaggtgttccctaaatcatgggctgcaatcatgttgacattcgacaatgctggtatgtggcaa |
37636806 |
T |
|
| Q |
104 |
ttgagatcaga |
114 |
Q |
| |
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||||| ||||| |
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| T |
37636805 |
ttgaggtcaga |
37636795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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