View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9319_low_27 (Length: 328)

Name: NF9319_low_27
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9319_low_27
NF9319_low_27
[»] chr7 (5 HSPs)
chr7 (1-284)||(19378706-19378989)
chr7 (145-204)||(20330928-20330987)
chr7 (9-54)||(2214576-2214621)
chr7 (287-318)||(19379007-19379038)
chr7 (9-46)||(33611030-33611067)
[»] chr2 (3 HSPs)
chr2 (5-56)||(41545004-41545055)
chr2 (3-55)||(10880107-10880159)
chr2 (3-96)||(18684517-18684610)
[»] chr8 (3 HSPs)
chr8 (5-55)||(11840283-11840333)
chr8 (9-95)||(41344278-41344364)
chr8 (3-31)||(11869915-11869943)
[»] chr5 (4 HSPs)
chr5 (3-56)||(29644774-29644827)
chr5 (3-95)||(13649505-13649597)
chr5 (3-55)||(13698977-13699029)
chr5 (6-92)||(1416728-1416814)
[»] chr3 (3 HSPs)
chr3 (6-85)||(13760103-13760182)
chr3 (3-116)||(11152137-11152251)
chr3 (3-75)||(8859714-8859786)
[»] chr6 (2 HSPs)
chr6 (9-95)||(30449426-30449512)
chr6 (9-52)||(20614791-20614834)
[»] chr4 (1 HSPs)
chr4 (22-94)||(12698909-12698981)
[»] chr1 (1 HSPs)
chr1 (3-31)||(17178975-17179003)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 19378706 - 19378989
Alignment:
Q  1 atagatgtttatagcattttattaataataagttgttcaatacaatgaggtacattgtaatgagtagtgggactaattaataatgtgtcaaccccatcaa 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19378706 atagatgcttatagcattttattaataataagttgttcaatacaatgaggtacattgtaatgagtagtgggactaactaataatgtgtcaaccccatcaa 19378805  T
Q  101 ggtgcgagctacctcacgtcctatttaaaaggttttccgattggtacacaatggcctttacgacacttaatattatgtggaggcattcttggacaatctt 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19378806 ggtgtgagctacctcacgtcctatttaaaaggttttccgattggtacacaatggcctttacgacacttaatattatgtggaggcattcttggacaatctt 19378905  T
Q  201 tatctgttaaacaaggacgaagagtcataccaaaagtattagaatcacatactattaagatataaaatatagaaagaaatagaa 284  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  19378906 tatctgttaaacaaggacgaagagtcataccaaaagcattagaatcacatactattaagatataaaatatggaaagaaatagaa 19378989  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 20330928 - 20330987
Alignment:
Q  145 tacacaatggcctttacgacacttaatattatgtggaggcattcttggacaatctttatc 204  Q
    |||||| ||||||||||||||| ||||||||||||| ||| || ||||||||||||||||    
T  20330928 tacacattggcctttacgacacctaatattatgtggtggcttttttggacaatctttatc 20330987  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 2214576 - 2214621
Alignment:
Q  9 ttatagcattttattaataataagttgttcaatacaatgaggtaca 54  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||    
T  2214576 ttatagcattacattaataataggttgttcaatacaatgaggtaca 2214621  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 318
Target Start/End: Original strand, 19379007 - 19379038
Alignment:
Q  287 tttagagttttatccatatttttcctctctgc 318  Q
    ||||||||||||||||||||||||||||||||    
T  19379007 tttagagttttatccatatttttcctctctgc 19379038  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 33611030 - 33611067
Alignment:
Q  9 ttatagcattttattaataataagttgttcaatacaat 46  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  33611030 ttatagcattttattaataataagaggttcaatacaat 33611067  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 41545055 - 41545004
Alignment:
Q  5 atgtttatagcattttattaataataagttgttcaatacaatgaggtacatt 56  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  41545055 atgtttatatcatcttattaataataagttgttcaatacaatgaggtacatt 41545004  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 10880159 - 10880107
Alignment:
Q  3 agatgtttatagcattttattaataataagttgttcaatacaatgaggtacat 55  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  10880159 agatgcttatagcatttcattaataataacttgttcaatacaacgaggtacat 10880107  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 18684517 - 18684610
Alignment:
Q  3 agatgtttatagcattttattaataataagttgttcaatacaatgaggtacattgtaatgagtagtgggactaattaataatgtgtcaacccca 96  Q
    ||||| ||||||||||| ||||||||| || | |||||||||| |||||||||   ||| ||| |||||||||| ||||| |||| || |||||    
T  18684517 agatgcttatagcatttcattaataatcagatattcaatacaacgaggtacataagaataagtggtgggactaactaatattgtggcagcccca 18684610  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 11840333 - 11840283
Alignment:
Q  5 atgtttatagcattttattaataataagttgttcaatacaatgaggtacat 55  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  11840333 atgtttataacattttattaacaataagttgttcaatacaatgaggtacat 11840283  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 41344364 - 41344278
Alignment:
Q  9 ttatagcattttattaataataagttgttcaatacaatgaggtacattgtaatgagtagtgggactaattaataatgtgtcaacccc 95  Q
    ||||||||||| ||||||||| || |||||||||||| |||||||||   |||  |||||||  ||| ||||||||||| |||||||    
T  41344364 ttatagcatttcattaataatcagatgttcaatacaacgaggtacataagaataggtagtggagctagttaataatgtggcaacccc 41344278  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 11869943 - 11869915
Alignment:
Q  3 agatgtttatagcattttattaataataa 31  Q
    |||||||||||||||||||||||||||||    
T  11869943 agatgtttatagcattttattaataataa 11869915  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 29644774 - 29644827
Alignment:
Q  3 agatgtttatagcattttattaataataagttgttcaatacaatgaggtacatt 56  Q
    ||||||||||||||||| ||||||||| || ||||||||| |||||||||||||    
T  29644774 agatgtttatagcatttcattaataatcagatgttcaatataatgaggtacatt 29644827  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 13649597 - 13649505
Alignment:
Q  3 agatgtttatagcattttattaataataagttgttcaatacaatgaggtacattgtaatgagtagtgggactaattaataatgtgtcaacccc 95  Q
    ||||| ||||||||||| ||| |||||||||| ||||||||||| ||||||||  |||| |||| || |||||  | |||||||| |||||||    
T  13649597 agatgcttatagcatttcatttataataagttattcaatacaatcaggtacatgataataagtaatgtgactagctgataatgtggcaacccc 13649505  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 13698977 - 13699029
Alignment:
Q  3 agatgtttatagcattttattaataataagttgttcaatacaatgaggtacat 55  Q
    ||||| |||| |||||||||||||||||| ||||||||||||| |||||||||    
T  13698977 agatgcttattgcattttattaataataacttgttcaatacaacgaggtacat 13699029  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 1416814 - 1416728
Alignment:
Q  6 tgtttatagcattttattaataataagttgttcaatacaatgaggtacattgtaatgagtagtgggactaattaataatgtgtcaac 92  Q
    ||||||||  |||||||||| ||| |  ||||||||||||||||||||| |  ||| |||| ||||||||  |||||||||| ||||    
T  1416814 tgtttataatattttattaaaaatcaaatgttcaatacaatgaggtacaataaaataagtaatgggactagctaataatgtgacaac 1416728  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 13760103 - 13760182
Alignment:
Q  6 tgtttatagcattttattaataataagttgttcaatacaatgaggtacattgtaatgagtagtgggactaattaataatg 85  Q
    |||||||||||||| |||||||||||| ||||||||||||  ||||||| |  ||| ||| |||||||||  ||||||||    
T  13760103 tgtttatagcatttcattaataataagatgttcaatacaacaaggtacaatagaataagtggtgggactagctaataatg 13760182  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 11152137 - 11152251
Alignment:
Q  3 agatgtttatagcattttattaataataagttgttcaatacaatgaggtacattgtaatgagtagtgggactaattaataatgtgtcaaccccatcaag- 101  Q
    ||||| ||||||||||| ||||||||| || ||||||||| ||  ||||||||   ||| | |||||||||||  | |||||||| |||||||| | ||     
T  11152137 agatgcttatagcatttcattaataatcagatgttcaatataacaaggtacataagaataaatagtgggactagctgataatgtggcaaccccagctagc 11152236  T
Q  102 gtgcgagctacctca 116  Q
    ||| |||||||||||    
T  11152237 gtgtgagctacctca 11152251  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 8859786 - 8859714
Alignment:
Q  3 agatgtttatagcattttattaataataagttgttcaatacaatgaggtacattgtaatgagtagtgggacta 75  Q
    ||||| ||||||||||| ||||||||| || ||||||||| || |||||||||   ||| | |||||||||||    
T  8859786 agatgcttatagcatttcattaataatcagatgttcaatataacgaggtacataagaataaatagtgggacta 8859714  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 30449426 - 30449512
Alignment:
Q  9 ttatagcattttattaataataagttgttcaatacaatgaggtacattgtaatgagtagtgggactaattaataatgtgtcaacccc 95  Q
    |||||||||||  ||| |||||||||||||||||| | |||||| | | |||| || |||||||||| || |||||||| |||||||    
T  30449426 ttatagcatttccttactaataagttgttcaatacgacgaggtataatataataagcagtgggactagttgataatgtggcaacccc 30449512  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 20614834 - 20614791
Alignment:
Q  9 ttatagcattttattaataataagttgttcaatacaatgaggta 52  Q
    ||||||||||| ||||||||| || |||||||||||||||||||    
T  20614834 ttatagcatttaattaataatcagatgttcaatacaatgaggta 20614791  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 12698909 - 12698981
Alignment:
Q  22 ttaataataagttgttcaatacaatgaggtacattgtaatgagtagtgggactaattaataatgtgtcaaccc 94  Q
    |||||||||||||||| |||| || |||||||||| |||| |||||||| ||||  |||| ||||| ||||||    
T  12698909 ttaataataagttgtttaatataacgaggtacattataataagtagtggaactagctaatgatgtggcaaccc 12698981  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 17179003 - 17178975
Alignment:
Q  3 agatgtttatagcattttattaataataa 31  Q
    |||||||||||||||||||||||||||||    
T  17179003 agatgtttatagcattttattaataataa 17178975  T

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