View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_29 (Length: 326)
Name: NF9319_low_29
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 97 - 312
Target Start/End: Original strand, 33495348 - 33495563
Alignment:
| Q |
97 |
accatctgcaccttcaccatgaatcttgtccttgatcttgtcaacaaatccctccttgtgctcttctccatggtgtccttccttgtggtctccatgacca |
196 |
Q |
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| T |
33495348 |
accatctgcaccttcaccatgaatcttgtccttgatcttgtcaacaaatccctccttgtgctcttccccatggtgtccttccttgtggtctccatgacca |
33495447 |
T |
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| Q |
197 |
aatccatgttgctctcctttgtgctcaccaccatgtcctcctacaaatccatgttgttctcctttgtactcaccatggtgttctcctcctacatgtccat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33495448 |
aatccatgttgctctcctttgtgctcaccaccatgtcctcctacaaatccatgttgttctcctttgtactcaccgtggtgttctcctcctacatgtccat |
33495547 |
T |
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| Q |
297 |
gttgttctcctctgtg |
312 |
Q |
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||||||||||| |||| |
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| T |
33495548 |
gttgttctcctttgtg |
33495563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33495252 - 33495317
Alignment:
| Q |
1 |
tgaaattaagatctaatcactgtcactgctgctgctatcatggccatgttcatgaccctctccatg |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33495252 |
tgaaattaagatctaatcactgtcactgctgctgctatcatgaccatgttcatgaccctctccatg |
33495317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 9757748 - 9757719
Alignment:
| Q |
8 |
aagatctaatcactgtcactgctgctgcta |
37 |
Q |
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| T |
9757748 |
aagatctaatcactgtcactgctgctgcta |
9757719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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