View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9319_low_3 (Length: 670)

Name: NF9319_low_3
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9319_low_3
NF9319_low_3
[»] chr5 (3 HSPs)
chr5 (1-198)||(30967104-30967301)
chr5 (197-322)||(30967840-30967962)
chr5 (570-658)||(30967957-30968044)
[»] chr8 (1 HSPs)
chr8 (6-113)||(9938644-9938751)
[»] chr6 (1 HSPs)
chr6 (381-427)||(24653862-24653908)
[»] chr3 (1 HSPs)
chr3 (16-113)||(42971834-42971931)
[»] chr2 (2 HSPs)
chr2 (380-420)||(1752623-1752663)
chr2 (381-429)||(42303102-42303150)
[»] chr1 (1 HSPs)
chr1 (389-429)||(15527892-15527932)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 30967104 - 30967301
Alignment:
Q  1 actattccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaatagctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30967104 actattccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaatagatg 30967203  T
Q  101 aactattatcacactgaatgacagtgcaatttgttccaggatccttctgagccaaactgcttgacaagcacaagaagctgcagctacaaactctgctt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30967204 aactattatcacactgaatgacagtgcaatttgttccaggatccttctgagctaaactgcttgacaagcacaagaagctgcagctacaaactctgctt 30967301  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 197 - 322
Target Start/End: Original strand, 30967840 - 30967962
Alignment:
Q  197 tttccatagaatgtttgaactcttcaaacactacttcatcatttcaagtgtagattaagtcatctacatacaaacttacaataagtattatttttcctcc 296  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||   ||||||||||||    
T  30967840 tttccatagaatgtttgaactcttcaaacacttcttcatcatttcaagtgtagattaagtcatctacatacaaacttacggtaag---tatttttcctcc 30967936  T
Q  297 agtttcttgcctaacaaacaaagtat 322  Q
    ||||||||||||||||||||||||||    
T  30967937 agtttcttgcctaacaaacaaagtat 30967962  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 570 - 658
Target Start/End: Original strand, 30967957 - 30968044
Alignment:
Q  570 aagtatagttctaatagtgtcccatctggctacaggagcaaaaaacttcattgtaatcaactccatacttttgagagtacccctttgct 658  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30967957 aagtatagttctattagtgtcccatctggttacaggagcaaaa-acttcattgtaatcaactccatacttttgagagtacccctttgct 30968044  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 9938644 - 9938751
Alignment:
Q  6 tccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaatagctgaacta 105  Q
    ||||| || ||||||||| ||||||||||||||||| |||||||||||||| ||  |||||||||  || || ||||| | |||||| ||||  ||||||    
T  9938644 tccttcttctgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaacta 9938743  T
Q  106 ttatcaca 113  Q
    ||||||||    
T  9938744 ttatcaca 9938751  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 24653862 - 24653908
Alignment:
Q  381 tgtaccatgctcttggagcttgtttgaggccatacaaagctttcttt 427  Q
    |||||||||||||||||||||| ||||| ||||| | ||||||||||    
T  24653862 tgtaccatgctcttggagcttgcttgagaccatatagagctttcttt 24653908  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 42971931 - 42971834
Alignment:
Q  16 gtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaatagctgaactattatcaca 113  Q
    ||||| ||||| ||||| |||||||||||||| || ||||| ||  |||||||||  | ||||||||| | ||| ||||| |  ||||||||||||||    
T  42971931 gtaaggtcccttagaaaatggtatctaacatcaatgtgtttgcatctcccatgcatgataggattttttgacagcttaatggaagaactattatcaca 42971834  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 420
Target Start/End: Original strand, 1752623 - 1752663
Alignment:
Q  380 ctgtaccatgctcttggagcttgtttgaggccatacaaagc 420  Q
    ||||||||||||| ||| |||||||| ||||||||||||||    
T  1752623 ctgtaccatgctcgtggtgcttgtttaaggccatacaaagc 1752663  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 42303150 - 42303102
Alignment:
Q  381 tgtaccatgctcttggagcttgtttgaggccatacaaagctttctttaa 429  Q
    |||||||||||||||| ||||| || | ||||||||| |||||||||||    
T  42303150 tgtaccatgctcttggcgcttgcttcaagccatacaatgctttctttaa 42303102  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 389 - 429
Target Start/End: Original strand, 15527892 - 15527932
Alignment:
Q  389 gctcttggagcttgtttgaggccatacaaagctttctttaa 429  Q
    |||| ||||||||||||||| ||||| ||||||||||||||    
T  15527892 gctcctggagcttgtttgagaccataaaaagctttctttaa 15527932  T

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