View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_37 (Length: 308)
Name: NF9319_low_37
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 40121600 - 40121879
Alignment:
| Q |
11 |
cacagaccataccactgctaagaacattgttccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtg |
110 |
Q |
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| T |
40121600 |
cacagaccataccactgctaagaatattgttccttctcttccaatgaaaaatctatcaagcagagacaatgttgaagtgtcctctccattagtgccggtg |
40121699 |
T |
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| Q |
111 |
agcactactactaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaatatgtacacctagtttgttggaaa |
210 |
Q |
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| T |
40121700 |
agcactactactaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaata---acacctagtttgttggaaa |
40121796 |
T |
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| Q |
211 |
tgaatttgttctcaccaacttcttttggtaactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaag |
293 |
Q |
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| T |
40121797 |
tgaatttgttctcaccaacttcttttggtaactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaag |
40121879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 42 - 293
Target Start/End: Original strand, 40125283 - 40125531
Alignment:
| Q |
42 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
141 |
Q |
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| T |
40125283 |
ccttcccttccaatgaaaaacttcacaaacaaagacactgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40125379 |
T |
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| Q |
142 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctcaccaacttcttttgg |
238 |
Q |
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| T |
40125380 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaattgaatttgctctcaccaacttcttttgg |
40125476 |
T |
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| Q |
239 |
taactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaag |
293 |
Q |
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| T |
40125477 |
taactggtgttttgttcctcccatcatcaccccaagagtttgatttgtttggaag |
40125531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 42 - 291
Target Start/End: Original strand, 40092811 - 40093057
Alignment:
| Q |
42 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
141 |
Q |
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| T |
40092811 |
ccttcccttccaatgaaaaacttcacaaacaaagacagtgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40092907 |
T |
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| Q |
142 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctcaccaacttcttttgg |
238 |
Q |
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| T |
40092908 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaattgaatttgctctcaccaacttcttttgg |
40093004 |
T |
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| Q |
239 |
taactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttgga |
291 |
Q |
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| T |
40093005 |
taactggtgttttgttcctcccatcatcaccccaagagtttgatttgtttgga |
40093057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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