View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9319_low_38 (Length: 299)

Name: NF9319_low_38
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9319_low_38
NF9319_low_38
[»] chr4 (1 HSPs)
chr4 (17-299)||(43528988-43529270)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 43528988 - 43529270
Alignment:
Q  17 caccaccaactccctcaacttcctctacaactccttcaccaccaccaccaacctcactctcatccccgacgcccacatccaaccacctgtcatccgcatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43528988 caccaccaactccctcaacttcctctacaactccttcaccaccaccaccaacctcactctcatccccgacgcccacatccaaccacctgtcatccgcatg 43529087  T
Q  117 accaacgactccaaccaatactcttacggccgtgccttccaccccactaaactccccatgctcaaaccttcaccttcctcaacaaacatcacttccttct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43529088 accaacgactccaaccaatactcttacggccgtgccttccaccccactaaactccccatgctcaaaccttcaccttcctcaacaaacatcacttccttct 43529187  T
Q  217 ccacttccttcatcttctccatcttaccagacaaccccaccagccctggcttcggtctcgctttcgtcctatgctactccact 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||    
T  43529188 ccacttccttcatcttctccatcttaccagacaaccccaccagccctggcttcggtctcgctttcgtcctctgcaacaccact 43529270  T

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