View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_4 (Length: 597)
Name: NF9319_low_4
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 5173923 - 5174501
Alignment:
| Q |
1 |
ttatgttgtaagagacccgagtcatttcattcaagtgtttttggagtgtatgcacataatttatttttgtgagtatatatattagaatgtcacaattgca |
100 |
Q |
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| T |
5173923 |
ttatgttgtaagagacccgagtcatttcattcaagtgtttttggagtgtatgcacataatttaattttgtgagtatatatattagaatgtcacaattgca |
5174022 |
T |
|
| Q |
101 |
ggccgtattgttgatatcgacacaaagttaaaggttttacaaaggagacaagctgtattgttatgaaattaatatatgttgtgtagtgttttggacaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5174023 |
ggccgtattgttgatatcgacacaaagttaaaggttttacaaaggagacaagctgtattgttatgaaattaatatatgttatgtagtgttttggacaact |
5174122 |
T |
|
| Q |
201 |
aattatgttatattatcatcgcatagcagttatgaaaaggtgacaaactgataatcttatgcaaaagttgtcctgttttgattgtttgttacattataat |
300 |
Q |
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| T |
5174123 |
aattatgttatattatcatcgcatagcagttatgaaaaggtgacaaactgataatcttatgcaaaagttgtcctgttttgattgtttgttacattataat |
5174222 |
T |
|
| Q |
301 |
atggttatagtccccaatttagaactttaattataaaataaatgaaggcaaataatgacatatgaataggtctacaataatccttggctctcacgttacc |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174223 |
atggttttagtccccaatttagaactttaattataaaataaatgaaggcaaataatgacatatgaataggtctacaataatccttggctctcacgttacc |
5174322 |
T |
|
| Q |
401 |
acctttaagaacgatgatatagatcctaggataatttatgtttaaatgtaaccataaaacaactaagt-aggtattagtaacagttgtagtttttgtcat |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5174323 |
acctttaagaacgatgatatagatcctaggataatttatgttttaatgtaaccataaaacaactaagtaaggtattagtaacagttgtagtttttgtcat |
5174422 |
T |
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| Q |
500 |
atttgatacttgtcattttcaacccctttctcttcctatataggcctttttaattagtttggaagggttggaaaagacaaaag |
582 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
5174423 |
atttgatacttgtcattttcaacccctttctcttcctatacaggccttt----ttagtttggaagggttggaaaagacaaaag |
5174501 |
T |
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