View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_40 (Length: 283)
Name: NF9319_low_40
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 265
Target Start/End: Complemental strand, 42198696 - 42198449
Alignment:
| Q |
22 |
tattggacaatgcacgagattgagtattgttgacatggaaatgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaacc |
121 |
Q |
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| T |
42198696 |
tattggacaatgcacgagattgagtattgttgacatggaaatgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaacc |
42198597 |
T |
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| Q |
122 |
ttgaacttgcaaggaaactctttgaatggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacatttggttgtcaggga |
221 |
Q |
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| T |
42198596 |
ttgaacttgcaaggaaactctttgaaaggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacaactggttgtcaggga |
42198497 |
T |
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| Q |
222 |
acattcctaaattagaag----taagcggattgaaaatacttgtgatg |
265 |
Q |
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| T |
42198496 |
acattcctaaattagaagtaattaagcggattgaaaatacttgtgatg |
42198449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 265
Target Start/End: Complemental strand, 42211263 - 42211024
Alignment:
| Q |
26 |
ggacaatgcacgagattgagtattgttgacatggaaatgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttga |
125 |
Q |
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| T |
42211263 |
ggacgatgcaagagattgagttttctggacttgcgaatgaataagcttgctggtgtcatacccatggagatttttcaactctctggcttgacaactttat |
42211164 |
T |
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| Q |
126 |
acttgcaaggaaactctttgaatggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacatttggttgtcagggaacat |
225 |
Q |
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| T |
42211163 |
acttacatggaaattctctgaacggttcgcttcctcctcaattcaaaatggagcagctagaggccatggttgtttcggacaacaagctgtcagggaacat |
42211064 |
T |
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| Q |
226 |
tcctaaattagaagtaagcggattgaaaatacttgtgatg |
265 |
Q |
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| T |
42211063 |
tcctaaaatcgaagttaacggattgaaaacacttatgatg |
42211024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 265
Target Start/End: Complemental strand, 42223479 - 42223240
Alignment:
| Q |
26 |
ggacaatgcacgagattgagtattgttgacatggaaatgaataatcttgttggtgccataccaatggagatttttcaattcaatgacttgacaaccttga |
125 |
Q |
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| T |
42223479 |
ggacaatgcaagagattgaattatctggacttgcaaatgaataagcttgttggtgtcataccaatggagatttttcaactctctagcttgacaactttat |
42223380 |
T |
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| Q |
126 |
acttgcaaggaaactctttgaatggttcgattcctcctgagttaaaaatggagcatctagagaccatggttatttcgaacatttggttgtcagggaacat |
225 |
Q |
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| T |
42223379 |
acttacatggaaattctctgaatggttcgcttcctccttcgttcaagatggagcagctagtggccatggttgtttcagacaacatgctgtcagggaacat |
42223280 |
T |
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| Q |
226 |
tcctaaattagaagtaagcggattgaaaatacttgtgatg |
265 |
Q |
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| T |
42223279 |
tcctaaaatcgaagttgacggattgaaaacactagtgatg |
42223240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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