View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_5 (Length: 484)
Name: NF9319_low_5
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_5 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 202 - 484
Target Start/End: Complemental strand, 36084136 - 36083857
Alignment:
| Q |
202 |
atattcttaaatgataagagaagtttattaataaatctatgaaaaaatatatctcatttgaattgtgtatcttgttctcattcctaaataagagttcttt |
301 |
Q |
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| T |
36084136 |
atattcttaaatgataagaaaagtttattaataaatctatgaaaaaatatatctcatttgaattgtgtatcttgttctcattcctaa-taagagttcttt |
36084038 |
T |
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| Q |
302 |
ttcactannnnnnnncataggaagtgacacttacgccaatcatcacattttaaaattttatttgtatgaatcttctttaagatgattgagaagcttttgc |
401 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36084037 |
ttcattattttttt-cataggaagtgacacttacgccaatcatcacattttaaaattttatttgtatgaatcttctttaagatgattgagaagcttttgc |
36083939 |
T |
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| Q |
402 |
ctcaaacaatagaaaaatgtttgagaagccatgcgccctataagnnnnnnnnattactacttactttggaagttcaagttcac |
484 |
Q |
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| T |
36083938 |
ctcaaacaatagaaaaatgtttgagaagccatgcgccctataag-ttcttttattactacttactttggaagttcaagttcac |
36083857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 36085853 - 36085651
Alignment:
| Q |
1 |
tcgaatctaattatatgaatcttttaggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatatgaatgaggtca |
100 |
Q |
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| T |
36085853 |
tcgaatctaattatatgaatcttttaggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatatgaatgaggtca |
36085754 |
T |
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| Q |
101 |
gattccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttgaatgtttaagtttgctaaatacaggaatttgataggcaagttttact |
200 |
Q |
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| T |
36085753 |
gattccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttgaatgtttaagtttgctaaatacaggaatttgataggcaagttttact |
36085654 |
T |
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| Q |
201 |
gat |
203 |
Q |
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||| |
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| T |
36085653 |
gat |
36085651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 332 - 434
Target Start/End: Complemental strand, 36069733 - 36069633
Alignment:
| Q |
332 |
ttacgccaatcatcacattttaaaattttatttgtatgaatcttctttaagatgattgagaagcttttgcctcaaacaatagaaaaatgtttgagaagcc |
431 |
Q |
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|||||||||||||||||||| ||| |||||| | |||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
36069733 |
ttacgccaatcatcacatttaaaagttttatgtatatgaatctt-tttaagatgtttgagaagtttttgcctcaaacaata-aaaaatgtttgagaagcc |
36069636 |
T |
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| Q |
432 |
atg |
434 |
Q |
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||| |
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| T |
36069635 |
atg |
36069633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 36069851 - 36069776
Alignment:
| Q |
205 |
ttcttaaatgataagagaagttt-attaataaatctatgaaaaaatatatctcatttgaattgtgtatcttgttct |
279 |
Q |
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| T |
36069851 |
ttcttaactgatgagagaatttttattaataaatctatgataaaatatatctcattttaattgtgtatcttgttct |
36069776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 40730158 - 40730349
Alignment:
| Q |
4 |
aatctaattatatgaatcttttaggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatatgaatgaggtcagat |
103 |
Q |
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| T |
40730158 |
aatctaattatatgaatcttttaggatgaaggtttggatgtgattgcagaaggattggatactttgaaaaacatggcacacgatatgaacgaggtcagat |
40730257 |
T |
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| Q |
104 |
tccctattgtgtttgtctttcatcctttgcgtgtgtgatatacttatttgaatgtttaagtttgctaaatacaggaatttgataggcaagtt |
195 |
Q |
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| T |
40730258 |
tgcctattgtgtttgtctttcatcctttgcgtgtgtgatatatttatttgaatgtttaagtttgtcaaatgcaggaatttgataggcaagtt |
40730349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 28511149 - 28511073
Alignment:
| Q |
25 |
taggatgaaggtttggatgtgattgtagaaggattggatactttgaaaaacatggcacacgatatgaatgaggtcag |
101 |
Q |
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|||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||| || || |||||||||||||| |
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| T |
28511149 |
taggatcaaggtttggatatgattgcagaaggattggatactttgaaagacatggcgcatgacatgaatgaggtcag |
28511073 |
T |
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