View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9319_low_52 (Length: 257)

Name: NF9319_low_52
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9319_low_52
NF9319_low_52
[»] chr8 (2 HSPs)
chr8 (1-244)||(9060654-9060897)
chr8 (158-232)||(38738327-38738401)
[»] chr7 (1 HSPs)
chr7 (15-244)||(29374683-29374912)
[»] chr4 (6 HSPs)
chr4 (13-111)||(26054931-26055029)
chr4 (13-111)||(26108171-26108269)
chr4 (5-135)||(19477298-19477434)
chr4 (47-243)||(30972399-30972595)
chr4 (120-223)||(8813912-8814015)
chr4 (114-230)||(45637335-45637451)
[»] chr3 (2 HSPs)
chr3 (4-150)||(25845633-25845779)
chr3 (120-223)||(21408213-21408316)
[»] chr5 (2 HSPs)
chr5 (47-243)||(39839796-39839992)
chr5 (115-235)||(8487950-8488070)
[»] chr6 (1 HSPs)
chr6 (91-232)||(18673267-18673408)
[»] chr1 (4 HSPs)
chr1 (24-133)||(4889452-4889561)
chr1 (114-230)||(2653801-2653917)
chr1 (47-100)||(12688213-12688266)
chr1 (171-243)||(6723846-6723918)
[»] chr2 (1 HSPs)
chr2 (115-235)||(35590123-35590243)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 9060897 - 9060654
Alignment:
Q  1 aacaaaacagacaaaattaaccaatgtccaaaatagtgaagggtgaaagctaccatccatgatagttaacgtgaagtgatggaaacttcgccttcaacca 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9060897 aacaaagcagacaaaattaaccaatgtccaaaatagtgaagggtgacagctaccatccatgatagttaacgtgaagtgatggaaacttcgccttcaacca 9060798  T
Q  101 gaaataagaaagcgacttaattttatcaaccacctgtaaaattgagcaatgtttactgttgaagagcctattgtttctctctttccatatctcccatatt 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  9060797 gaaataagaaagcgacttaattttatcaaccacctgcaaaattgagcaatgtttactattgaagagcctattgtttctctctttccatatctcccacatt 9060698  T
Q  201 gctgcaaaccaaagaacctgtaaaatggattgacgcgcctttgc 244  Q
    | |||||||||||||||||||||||||||||||| |||||||||    
T  9060697 gttgcaaaccaaagaacctgtaaaatggattgactcgcctttgc 9060654  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 38738401 - 38738327
Alignment:
Q  158 gttgaagagcctattgtttctctctttccatatctcccatattgctgcaaaccaaagaacctgtaaaatggattg 232  Q
    |||||| | |||||||||||| |||||||| || |||||||  | |||||||||||  |||||||||||||||||    
T  38738401 gttgaaaatcctattgtttctttctttccaaatttcccataccgatgcaaaccaaatgacctgtaaaatggattg 38738327  T

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Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 29374683 - 29374912
Alignment:
Q  15 aattaaccaatgtccaaaatagtgaagggtgaaagctaccatccatgatagttaacgtgaagtgatggaaacttcgccttcaaccagaaataagaaagcg 114  Q
    |||||||||||| ||||||||||||| ||||||||| |||| ||||||||||| |  ||||| || |||||||||||||||||||| | | |||| ||||    
T  29374683 aattaaccaatgcccaaaatagtgaaaggtgaaagccaccagccatgatagttgagatgaagagaaggaaacttcgccttcaaccacataaaagacagcg 29374782  T
Q  115 acttaattttatcaaccacctgtaaaattgagcaatgtttactgttgaagagcctattgtttctctctttccatatctcccatattgctgcaaaccaaag 214  Q
    | ||||||||||| |||||||||||||||||||| |||||||   |||||| |||||||||||| |||||||| ||||||||   || ||||||||||||    
T  29374783 atttaattttatccaccacctgtaaaattgagcattgtttaccagtgaagatcctattgtttctttctttccagatctcccacgatgttgcaaaccaaag 29374882  T
Q  215 aacctgtaaaatggattgacgcgcctttgc 244  Q
    ||||||||| ||||| ||||||| ||||||    
T  29374883 aacctgtaatatggaatgacgcgtctttgc 29374912  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 26055029 - 26054931
Alignment:
Q  13 aaaattaaccaatgtccaaaatagtgaagggtgaaagctaccatccatgatagttaacgtgaagtgatggaaacttcgccttcaaccagaaataagaaa 111  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||| | ||||| ||||||||||||| |||||||||||||| ||||||    
T  26055029 aaaattaaccaatgtccaaaatagtgaagggtgaaagccaccagtcatgatagttgaggtgaaatgatggaaacttcaccttcaaccagaaaaaagaaa 26054931  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 26108269 - 26108171
Alignment:
Q  13 aaaattaaccaatgtccaaaatagtgaagggtgaaagctaccatccatgatagttaacgtgaagtgatggaaacttcgccttcaaccagaaataagaaa 111  Q
    |||||||||||||| ||||||||||||||||||||||| ||||  |||||||||| | ||||| ||||||||||||| |||||||||||||| ||||||    
T  26108269 aaaattaaccaatgcccaaaatagtgaagggtgaaagccaccagtcatgatagttgaggtgaaatgatggaaacttcaccttcaaccagaaaaaagaaa 26108171  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 19477434 - 19477298
Alignment:
Q  5 aaacagacaaaa-ttaaccaatgtccaaaatagtgaagggtgaaa--gctaccatccatgatagttaacgtga---agtgatggaaacttcgccttcaac 98  Q
    |||||||||||| ||| |||||| |||||| ||||||||||||||  || |||| ||||||||||| | ||||   ||||| ||||||||||||||||||    
T  19477434 aaacagacaaaaattatccaatgcccaaaacagtgaagggtgaaaaagccaccagccatgatagttgaggtgatcaagtgaaggaaacttcgccttcaac 19477335  T
Q  99 cagaaataagaaagcgacttaattttatcaaccacct 135  Q
    || ||| |||  |||||||||||||||| ||||||||    
T  19477334 cacaaaaaaggtagcgacttaattttattaaccacct 19477298  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 243
Target Start/End: Original strand, 30972399 - 30972595
Alignment:
Q  47 aagctaccatccatgatagttaacgtgaagtgatggaaacttcgccttcaaccagaaataagaaagcgacttaattttatcaaccacctgtaaaattgag 146  Q
    |||| |||| ||||||||||| | | |||| || ||||| |||||||||| ||| |   |||  |||||||||||||||||||||||||| | |||||||    
T  30972399 aagccaccagccatgatagttgaagggaagagaaggaaatttcgccttcagccacatgaaagtcagcgacttaattttatcaaccacctgcataattgag 30972498  T
Q  147 caatgtttactgttgaagagcctattgtttctctctttccatatctcccatattgctgcaaaccaaagaacctgtaaaatggattgacgcgcctttg 243  Q
    || | ||| |  || |||||| | || ||||| |||||||| || | |||  | | |||| ||||||||||||||||||| ||| | || |||||||    
T  30972499 cactctttgccattaaagagcatgttatttctttctttccaaattttccacgtagttgcataccaaagaacctgtaaaattgatcgtcgtgcctttg 30972595  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 8814015 - 8813912
Alignment:
Q  120 attttatcaaccacctgtaaaattgagcaatgtttactgttgaagagcctattgtttctctctttccatatctcccatattgctgcaaaccaaagaacct 219  Q
    ||||| || |||||||| | ||| ||||||| |||   |||||||| |||||||||||| |||||||| || ||||| | || ||||||||||| |||||    
T  8814015 attttgtccaccacctgcacaatagagcaatttttgtcgttgaagatcctattgtttctttctttccaaatttcccagactgttgcaaaccaaataacct 8813916  T
Q  220 gtaa 223  Q
    ||||    
T  8813915 gtaa 8813912  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 45637451 - 45637335
Alignment:
Q  114 gacttaattttatcaaccacctgtaaaattgagcaatgtttactgttgaagagcctattgtttctctctttccatatctcccatattgctgcaaaccaaa 213  Q
    |||||||||||||| ||||||||   ||| || |||| |||   |||||| | |||||||||||| |||||||| || ||||| |  | |||||||||||    
T  45637451 gacttaattttatccaccacctgcggaatagaacaatttttgtcgttgaaaatcctattgtttctttctttccaaatttcccacaccgttgcaaaccaaa 45637352  T
Q  214 gaacctgtaaaatggat 230  Q
      |||||||||||||||    
T  45637351 tgacctgtaaaatggat 45637335  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 25845779 - 25845633
Alignment:
Q  4 aaaacagacaaaattaaccaatgtccaaaatagtgaagggtgaaagctaccatccatgatagttaacgtgaagtgatggaaacttcgccttcaaccagaa 103  Q
    |||||||| | |||||| ||||| ||||||| ||| | ||   |||| |||| ||||| ||||| | | | || || |||||||||||||||||||| |     
T  25845779 aaaacagaaacaattaatcaatgcccaaaatggtgtatggactaagccaccaaccatggtagttcaagggcagagaaggaaacttcgccttcaaccacat 25845680  T
Q  104 ataagaaagcgacttaattttatcaaccacctgtaaaattgagcaat 150  Q
      |||| |||||||||||||||||||||||||| | |||||| ||||    
T  25845679 gaaagagagcgacttaattttatcaaccacctgaacaattgaacaat 25845633  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 21408213 - 21408316
Alignment:
Q  120 attttatcaaccacctgtaaaattgagcaatgtttactgttgaagagcctattgtttctctctttccatatctcccatattgctgcaaaccaaagaacct 219  Q
    ||||| || |||||||| | ||| ||||||| |||   |||||||| |||||||||||| |||||||| || ||||| | || ||||||| ||| |||||    
T  21408213 attttgtccaccacctgcacaatagagcaatttttgtcgttgaagatcctattgtttctttctttccaaatttcccagactgttgcaaacaaaataacct 21408312  T
Q  220 gtaa 223  Q
    ||||    
T  21408313 gtaa 21408316  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 243
Target Start/End: Complemental strand, 39839992 - 39839796
Alignment:
Q  47 aagctaccatccatgatagttaacgtgaagtgatggaaacttcgccttcaaccagaaataagaaagcgacttaattttatcaaccacctgtaaaattgag 146  Q
    |||| |||| ||||||||||||| | |||| ||||||||||||| ||||||||| |   | ||   ||||||||||||||||||||||||||  || | |    
T  39839992 aagccaccaaccatgatagttaaagggaagagatggaaacttcgtcttcaaccacatgaacgacgtcgacttaattttatcaaccacctgtaggataggg 39839893  T
Q  147 caatgtttactgttgaagagcctattgtttctctctttccatatctcccatattgctgcaaaccaaagaacctgtaaaatggattgacgcgcctttg 243  Q
    || | |||    ||||| | |||||| ||| | ||||| ||||| |||||  | |  ||| ||||||||||||||||||| ||| |||| |||||||    
T  39839892 cactctttgtcattgaacaacctattatttttttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattgatcgacgagcctttg 39839796  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 8488070 - 8487950
Alignment:
Q  115 acttaattttatcaaccacctgtaaaattgagcaatgtttactgttgaagagcctattgtttctctctttccatatctcccatattgctgcaaaccaaag 214  Q
    |||| ||||| || |||||||| ||||| ||||||  |||  ||||||| | || ||| ||||| ||||||||||| ||||| | || |||||||||||     
T  8488070 acttgattttgtccaccacctgcaaaatagagcaaattttgttgttgaaaatccgattatttctttctttccatatttcccacactgttgcaaaccaaat 8487971  T
Q  215 aacctgtaaaatggattgacg 235  Q
    ||||||||  || ||||||||    
T  8487970 aacctgtatgattgattgacg 8487950  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 232
Target Start/End: Complemental strand, 18673408 - 18673267
Alignment:
Q  91 ccttcaaccagaaataagaaagcgacttaattttatcaaccacctgtaaaattgagcaatgtttactgttgaagagcctattgtttctctctttccatat 190  Q
    |||||||||| | | ||| ||| |||||||||||||| ||||||||   ||| || |||| |||   |||||| | |||||||||||| | |||||| ||    
T  18673408 ccttcaaccacataaaagtaagagacttaattttatccaccacctgcggaatagaacaatttttgtcgttgaaaatcctattgtttctttttttccaaat 18673309  T
Q  191 ctcccatattgctgcaaaccaaagaacctgtaaaatggattg 232  Q
     || |||| || |||||||||||  || ||||||||||||||    
T  18673308 ttctcatactgatgcaaaccaaatgacttgtaaaatggattg 18673267  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 4889561 - 4889452
Alignment:
Q  24 atgtccaaaatagtgaagggtgaaagctaccatccatgatagttaacgtgaagtgatggaaacttcgccttcaaccagaaataagaaagcgacttaattt 123  Q
    ||||||||||||||||| ||   |||  |||| ||||||||||||| | |||| || || ||||||||||| ||||| |   | | ||||||||||||||    
T  4889561 atgtccaaaatagtgaatggactaagtcaccacccatgatagttaaagggaagagaagggaacttcgccttgaaccacatgaatgcaagcgacttaattt 4889462  T
Q  124 tatcaaccac 133  Q
    ||||||||||    
T  4889461 tatcaaccac 4889452  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 2653801 - 2653917
Alignment:
Q  114 gacttaattttatcaaccacctgtaaaattgagcaatgtttactgttgaagagcctattgtttctctctttccatatctcccatattgctgcaaaccaaa 213  Q
    |||||||||||||| ||||||||   ||| || |||| |||   |||||| | |||||||||||| |||||||| || ||||| |  | |||||||||||    
T  2653801 gacttaattttatccaccacctgcggaatagaacaatttttgtcgttgaaaatcctattgtttctttctttccaaatttcccacaccgttgcaaaccaaa 2653900  T
Q  214 gaacctgtaaaatggat 230  Q
      |||||||||||||||    
T  2653901 tgacctgtaaaatggat 2653917  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 12688266 - 12688213
Alignment:
Q  47 aagctaccatccatgatagttaacgtgaagtgatggaaacttcgccttcaacca 100  Q
    |||| |||||||||||||||||| | |||| | |||||||||| ||||||||||    
T  12688266 aagccaccatccatgatagttaaagggaagagttggaaacttcaccttcaacca 12688213  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 6723846 - 6723918
Alignment:
Q  171 ttgtttctctctttccatatctcccatattgctgcaaaccaaagaacctgtaaaatggattgacgcgcctttg 243  Q
    |||||||| ||||||||||| |||||||| |  ||||| || | ||||||||| |||||||||| | ||||||    
T  6723846 ttgtttctttctttccatatttcccatatagtcgcaaatcatataacctgtaagatggattgacacacctttg 6723918  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 35590243 - 35590123
Alignment:
Q  115 acttaattttatcaaccacctgtaaaattgagcaatgtttactgttgaagagcctattgtttctctctttccatatctcccatattgctgcaaaccaaag 214  Q
    |||||||||||||||||||||| | ||||||||| | ||| |  ||||| | ||| || ||||| |||||||| || |||||  | | |||| |||||||    
T  35590243 acttaattttatcaaccacctgaataattgagcattctttgccattgaaaaacctgttatttctttctttccagatttcccacgtagttgcataccaaag 35590144  T
Q  215 aacctgtaaaatggattgacg 235  Q
    ||| |||||||| ||| ||||    
T  35590143 aacatgtaaaatagatcgacg 35590123  T

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