View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_6 (Length: 443)
Name: NF9319_low_6
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 160 - 363
Target Start/End: Complemental strand, 39197714 - 39197500
Alignment:
| Q |
160 |
ctactcctcgtgcgtggcaagtcccaatgtacaactgtcttaccttccttctctgtcaatctcttttccctccatttattattttactcatttatttaag |
259 |
Q |
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| T |
39197714 |
ctactcctcgtgcgtggcaagtcccaatgtacaactgtcttaccttccttctctgtcaatctcttttccctccatttattattttactcatttatttaag |
39197615 |
T |
|
| Q |
260 |
ataaaaatcaaaaatcaccacctcgaaatgcaaagggacagtttattatattttgttttatt-----------cattaaacaaaagagaaatatgctaag |
348 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
39197614 |
ataaaaataaaaaatcaccacctcgaaatgcaaagggacattctattatattttgttttattcgttagtattacattaaacaaatgagaaatatgctaag |
39197515 |
T |
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| Q |
349 |
aacgctctttcctta |
363 |
Q |
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||||||||||||||| |
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| T |
39197514 |
aacgctctttcctta |
39197500 |
T |
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Back To:
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 2575872 - 2575826
Alignment:
| Q |
199 |
ttaccttccttctctgtcaatctcttttccctccatttattatttta |
245 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
2575872 |
ttaccttccctctctgtcaatctcttttccctccatttgttatttta |
2575826 |
T |
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