View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9319_low_62 (Length: 250)
Name: NF9319_low_62
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_62 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 39403828 - 39403920
Alignment:
| Q |
158 |
gcaaaactcattacaagtaaatatttttctacaaaaatggtgaattggtaagccacatggcataatcttatcttcatatttttatcatcgcct |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39403828 |
gcaaaactcattacaagtaaatatttttctacaaaaatggtgaattggtaagccacatggcataatcttatcttcatatttttatcatcgcct |
39403920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 39403684 - 39403753
Alignment:
| Q |
14 |
aggcggcgtgagatgattagtgaaaaacttcaaggagatgaagtagtaggacgggaaaaccttgtgttag |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39403684 |
aggcggcgtgagatgattagtgaaaaacttcaaggagatgaagtagtaggacgggaaaaccttgtgttag |
39403753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University