View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9319_low_67 (Length: 246)
Name: NF9319_low_67
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_67 |
 | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 33323693 - 33323458
Alignment:
| Q |
1 |
cgaaatcctgaaattcttattgtgcctcatttcctttccatccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaaattgcttccat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33323693 |
cgaaatcctgaaattcttcttgtgcctcatttcctttccgtccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccat |
33323594 |
T |
|
| Q |
101 |
ttcatccccacgatgccctttaagttcttccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacatggtatcaaccaattaa |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33323593 |
ttcatccccacgacgccctttaagttcttccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaa |
33323494 |
T |
|
| Q |
201 |
atcatgctagcttacattatcctaaaattgatgtcc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323493 |
atcatgctagcttacattatcctaaaattgatgtcc |
33323458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 1042102 - 1041867
Alignment:
| Q |
1 |
cgaaatcctgaaattcttattgtgcctcatttcctttccatccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaaattgcttccat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1042102 |
cgaaatcctgaaattcttcttgtgcctcatttcctttccgtccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccat |
1042003 |
T |
|
| Q |
101 |
ttcatccccacgatgccctttaagttcttccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacatggtatcaaccaattaa |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1042002 |
ttcatccccacgacgccctttaagttcttccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaa |
1041903 |
T |
|
| Q |
201 |
atcatgctagcttacattatcctaaaattgatgtcc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1041902 |
atcatgctagcttacattatcctaaaattgatgtcc |
1041867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 41193167 - 41192932
Alignment:
| Q |
1 |
cgaaatcctgaaattcttattgtgcctcatttcctttccatccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaaattgcttccat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41193167 |
cgaaatcctgaaattcttcttgtgcctcatttcctttccgtccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccat |
41193068 |
T |
|
| Q |
101 |
ttcatccccacgatgccctttaagttcttccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacatggtatcaaccaattaa |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41193067 |
ttcatccccacgacgccctttaagttcttccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaa |
41192968 |
T |
|
| Q |
201 |
atcatgctagcttacattatcctaaaattgatgtcc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41192967 |
atcatgctagcttacattatcctaaaattgatgtcc |
41192932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 41200423 - 41200188
Alignment:
| Q |
1 |
cgaaatcctgaaattcttattgtgcctcatttcctttccatccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaaattgcttccat |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41200423 |
cgaaatcctgaaattcttcttgtgcctcatttcctttccgtccgtgttcttgagctgtaaaagtaagctcattcattttttgttgaaaacttgcttccat |
41200324 |
T |
|
| Q |
101 |
ttcatccccacgatgccctttaagttcttccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacatggtatcaaccaattaa |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41200323 |
ttcatccccacgacgccctttaagttcttccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaa |
41200224 |
T |
|
| Q |
201 |
atcatgctagcttacattatcctaaaattgatgtcc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41200223 |
atcatgctagcttacattatcctaaaattgatgtcc |
41200188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 41407727 - 41407621
Alignment:
| Q |
130 |
ccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacatggtatcaaccaattaaatcatgctagcttacattatcctaaaatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41407727 |
ccaacttctcagatactttatcagaagaagaaatgttccataacatttgagactaggtatcaaccaactaaatcatgctagcttacattatcctaaaatg |
41407628 |
T |
|
| Q |
230 |
gatgtcc |
236 |
Q |
| |
|
||||||| |
|
|
| T |
41407627 |
gatgtcc |
41407621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 3216 - 3321
Alignment:
| Q |
131 |
caacttctcagatactttatcagaagaagaaatgttccataacatttgagacatggtatcaaccaattaaatcatgctagcttacattatcctaaaattg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
3216 |
caacttctcagatactttatcagaagaagaaatgttccataacatttgagactaggtatcaaccaactaaatcatgctagcttacattatcctaaaatgg |
3315 |
T |
|
| Q |
231 |
atgtcc |
236 |
Q |
| |
|
|||||| |
|
|
| T |
3316 |
atgtcc |
3321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 23772 - 23877
Alignment:
| Q |
131 |
caacttctcagatactttatcagaagaagaaatgttccataacatttgagacatggtatcaaccaattaaatcatgctagcttacattatcctaaaattg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
23772 |
caacttctcagatactttatcagaagaagaaatgttccataacatttgagactaggtatcaaccaactaaatcatgctagcttacattatcctaaaatgg |
23871 |
T |
|
| Q |
231 |
atgtcc |
236 |
Q |
| |
|
|||||| |
|
|
| T |
23872 |
atgtcc |
23877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University