View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9319_low_69 (Length: 242)
Name: NF9319_low_69
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_69 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 35073455 - 35073230
Alignment:
| Q |
1 |
cgtccggtgcgtttttaaccagcccaaagtctgcaacctttgctctcatgtcatcacctaatagtatatttgatggttttaagtctctatgaatgaagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35073455 |
cgtccggtgcgtttttaaccagcccaaagtctgcaacctttgctctcatgtcatcacctaatagtatatttgatggttttaagtctctatgaatgaagct |
35073356 |
T |
|
| Q |
101 |
ttgctgagctaagctgtgcaggtattccaccccccgtccaacatccaaagctattatcaacctttgtttccatgtcaaaggagtgtacccatgttcacgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35073355 |
ttgctgagctaagctgtgcaggtattccaccccccgtccaacatccaaagctattatcaacctttgtttccatgtcaaaggagtgtacccatgttcacgg |
35073256 |
T |
|
| Q |
201 |
cattcaaacagatgctgcgttaatgt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
35073255 |
cattcaaacagatgctgcgttaatgt |
35073230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 38160094 - 38160318
Alignment:
| Q |
3 |
tccggtgcgtttttaaccagcccaaagtctgcaacctttgctctcatgtcatcacctaatagtatatttgatggttttaagtctctatgaatgaagcttt |
102 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| || ||||| || || ||||||||||| || ||||||||||||| |
|
|
| T |
38160094 |
tccggtgcatttttaaccaacccaaaatctgcaacctttgctctcatgtcatcacccaacagtatgttggagggttttaagtccctgtgaatgaagcttt |
38160193 |
T |
|
| Q |
103 |
gctgagctaagctgtgcaggtattccaccccccgtccaacatccaaagctattatcaacctttgtttccatgtcaaaggagtgtacccatgttcacggca |
202 |
Q |
| |
|
|||||||||||||||||| |||||| || || ||| | ||||||||||||||| | ||| ||| ||| |||||||||| | | |||| ||||| || |
|
|
| T |
38160194 |
gctgagctaagctgtgcaagtattctactcctcgtgctacatccaaagctattgctaccctctgtaaccaagtcaaaggagcgcatccattttcacccca |
38160293 |
T |
|
| Q |
203 |
ttcaaacagatgctgcgttaatgtt |
227 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
38160294 |
atcaaacagatgttgcgttaatgtt |
38160318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 33056714 - 33056593
Alignment:
| Q |
24 |
ccaaagtctgcaacctttgctctcatgtcatcacctaatagtatatttgatggttttaagtctctatgaatgaagctttgctgagctaagctgtgcaggt |
123 |
Q |
| |
|
||||| ||||| |||||||| ||||| ||||| || | || |||||||| ||||| |||||||| || ||||||||||| ||||| ||||| || |||| |
|
|
| T |
33056714 |
ccaaaatctgcgacctttgccctcatatcatctccaaggagaatatttgaaggtttcaagtctctgtgtatgaagctttgatgagccaagctatgtaggt |
33056615 |
T |
|
| Q |
124 |
attccaccccccgtccaacatc |
145 |
Q |
| |
|
| || || |||| | ||||||| |
|
|
| T |
33056614 |
actcaacaccccttgcaacatc |
33056593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University