View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_7 (Length: 439)
Name: NF9319_low_7
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 44949285 - 44948859
Alignment:
| Q |
1 |
gggatagatctcagtgagccgaacaatggaaaggcttcaatattgatcgaagcttctagactgctaaaagacttgctctgtcagatccagtccctcaaga |
100 |
Q |
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| T |
44949285 |
gggatagatctcagtgagccgaacaatggaaaggcttcaatattgatcgaagcttctagactgctaaaagacttgctctgtcagatccagtccctcaaga |
44949186 |
T |
|
| Q |
101 |
aagagaatgtctctttattgtctgaatctcactatgtaagattggcacttttttccctcctttgatcccatcattttaccctgttgagaatactgcatgt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949185 |
aagagaatgtctctttattgtctgaatctcattatgtaagattggcacttttttccctcctttgatcccatcattttaccctgttgagaatactgcatgt |
44949086 |
T |
|
| Q |
201 |
tgaattttgatgtttatgtggaaaagcttttattgtttgctagtttacttgaaatccattccgtttgtgttacaacattctggccagttacttacttgag |
300 |
Q |
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| T |
44949085 |
tgaattttgatgtttatgtggaaaagcttttattgtttgctagtttacttgaaatccattccgtttgtgttacagcattctggccagttacttacttgag |
44948986 |
T |
|
| Q |
301 |
ccgattagcaatacgtcacactttgatgtcacaaatcaacacactatttgacctgcgtgtaattcatgtgattggcttaattggacaggtgaccatggag |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44948985 |
ccgattagcaatacgtcacaatttgatgtcacaaatcaacacactatttgacctgcgtgtaattcatgtgattggcttaattggacaggtgaccatggag |
44948886 |
T |
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| Q |
401 |
aaaaatgagctaaaggaggagaatagt |
427 |
Q |
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| T |
44948885 |
aaaaatgagctaaaggaggagaatagt |
44948859 |
T |
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