View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9319_low_8 (Length: 438)
Name: NF9319_low_8
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_8 |
 | |
|
| [»] scaffold0240 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 3938183 - 3938599
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataat |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3938183 |
caatgagactgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataat |
3938282 |
T |
|
| Q |
108 |
cacaagnnnnnnngaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagt |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3938283 |
cacaagaaaaaaagaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagt |
3938382 |
T |
|
| Q |
208 |
tggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3938383 |
tggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtca |
3938482 |
T |
|
| Q |
308 |
cctcttaaagcattatgcattctcttaatagagaaattagcttgttgagaaatactgccatcaacacttgaaatagtctttgctgcaccaaagacnnnnn |
407 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3938483 |
cctcttaaagcattatacattctcttaatagagaaattagcttgttgaaaaatactgccatcaacacttgaaatagtctttgctgcaccaaagacttttt |
3938582 |
T |
|
| Q |
408 |
nnattacccatgaagct |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3938583 |
ttattacccatgaagct |
3938599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 424
Target Start/End: Complemental strand, 45066926 - 45066510
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataat |
107 |
Q |
| |
|
||||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||||||| |||||| |
|
|
| T |
45066926 |
caatgagactgaatatattggaaaatagattgccaattgctagtattgacaatcatattcatccatcccacaacacctttccaaacagcatcaacataat |
45066827 |
T |
|
| Q |
108 |
cacaagnnnnnnngaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagt |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45066826 |
cacaagaaaaaaagaggtgagaatgagtttcattctcctttgtacacaaaattcaaacttgatcacattggatacctactttaagcatcctatcacaagt |
45066727 |
T |
|
| Q |
208 |
tggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45066726 |
tggcaatctagcatgaataatcaaccaagtaacaaacattcattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtca |
45066627 |
T |
|
| Q |
308 |
cctcttaaagcattatgcattctcttaatagagaaattagcttgttgagaaatactgccatcaacacttgaaatagtctttgctgcaccaaagacnnnnn |
407 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45066626 |
cctcttaaagcattatacattctcttaatagagaaattagcttgttgaaaaatatttccatcaacacttgaaatagtctttgctgcaccaaagacttttt |
45066527 |
T |
|
| Q |
408 |
nnattacccatgaagct |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45066526 |
ttattacccatgaagct |
45066510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 5673805 - 5673666
Alignment:
| Q |
200 |
tcacaagttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttg |
299 |
Q |
| |
|
||||||||||| |||||| |||||||| | ||||||||| ||||| |||||||||||||| | ||||| || ||||||||||||||| ||| ||| |
|
|
| T |
5673805 |
tcacaagttggtaatctaacatgaatagttaaccaagtaccaaacgaacattttggaggggtaaggttattgcaaatcattttcctccaaataacttttt |
5673706 |
T |
|
| Q |
300 |
caaagtcacctcttaaagcattatgcattctcttaataga |
339 |
Q |
| |
|
||| || ||||| || ||||||| |||| |||||||||| |
|
|
| T |
5673705 |
taaaatctcctctcaaggcattatacattttcttaataga |
5673666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 25109845 - 25109777
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctc |
76 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| || || ||||||||||||| ||||||||||||||||| |
|
|
| T |
25109845 |
caatgagactgaacataatgcaaaatagactgtcagttgctagtattgatgctcatattcatccatctc |
25109777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 31929350 - 31929464
Alignment:
| Q |
196 |
cctatcacaagttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacc |
295 |
Q |
| |
|
||||||||||||||| |||||| |||| ||| || ||||||||||| |||||||||||| | || ||||| || ||||||||||||||| ||| |
|
|
| T |
31929350 |
cctatcacaagttggtaatctaccatgtatagccagccaagtaacaa----acattttggaggagtagggttattgtatgtcattttcctccaactaact |
31929445 |
T |
|
| Q |
296 |
tttgcaaagtcacctctta |
314 |
Q |
| |
|
|| | ||| |||||||||| |
|
|
| T |
31929446 |
ttggaaaaatcacctctta |
31929464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 47160220 - 47160285
Alignment:
| Q |
125 |
tgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctacttta |
190 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| || | |||||| || || ||||| |||||| |
|
|
| T |
47160220 |
tgagaatgaatttcattctcctttttacacaaaatacacaattggtcccaatgtataccaacttta |
47160285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 424
Target Start/End: Complemental strand, 22164049 - 22163633
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataat |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22164049 |
caatgagactgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataat |
22163950 |
T |
|
| Q |
108 |
cacaagnnnnnnngaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagt |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22163949 |
cacaagaaaaaaagaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagt |
22163850 |
T |
|
| Q |
208 |
tggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22163849 |
tggcaatctagcatgaataatcaaccaagtaataaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtca |
22163750 |
T |
|
| Q |
308 |
cctcttaaagcattatgcattctcttaatagagaaattagcttgttgagaaatactgccatcaacacttgaaatagtctttgctgcaccaaagacnnnnn |
407 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22163749 |
cctcttaaagcattatacattctcttaatagagaaattagcttgttgaaaaatactgccatcaacacttgaaatagtctttgctgcaccaaagacttttt |
22163650 |
T |
|
| Q |
408 |
nnattacccatgaagct |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22163649 |
ttattacccatgaagct |
22163633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 3423228 - 3423640
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataat |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
3423228 |
caatgagactgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcaacataat |
3423327 |
T |
|
| Q |
108 |
cacaagnnnnnnngaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagt |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3423328 |
cacaagaaaaaaagaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattgaatacctactttaagcatcctatcacaagt |
3423427 |
T |
|
| Q |
208 |
tggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtca |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3423428 |
tggcaatctaccatgaataatcaaccaagtaacaaacatacattttggaggggctggattat----tatcattttcctccaaccaacctttgcaaagtca |
3423523 |
T |
|
| Q |
308 |
cctcttaaagcattatgcattctcttaatagagaaattagcttgttgagaaatactgccatcaacacttgaaatagtctttgctgcaccaaagacnnnnn |
407 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3423524 |
cctcttaaagtattatacattctcctaatagagaaattagcttgttgaaaaatactgccatcaacacttgaaatagtctttgctgcaccaaagacttttt |
3423623 |
T |
|
| Q |
408 |
nnattacccatgaagct |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3423624 |
ttattacccatgaagct |
3423640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 70 - 286
Target Start/End: Original strand, 43191518 - 43191734
Alignment:
| Q |
70 |
ccatctcataacacctttctaaacagcatcagcataatcacaagnnnnnnngaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttgg |
169 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43191518 |
ccatctcataacacctttccaaacagcatcagcataatcacaagaaaaaaagaggtgagaatgaatttcattctcctttgtacacaaaatgcaaacttgg |
43191617 |
T |
|
| Q |
170 |
tcacattggatacctactttaagcatcctatcacaagttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattat |
269 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
43191618 |
tcacattgaatatctactttaagcatcctatcacaagttggcaatctatcatgaataatcaaccaagtaacaaacaaacatttaggagggtctggattat |
43191717 |
T |
|
| Q |
270 |
tacatatcattttcctc |
286 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43191718 |
tacatatcattttcctc |
43191734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 30273055 - 30273130
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacac |
83 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30273055 |
caatgagactgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacac |
30273130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 289
Target Start/End: Original strand, 52662495 - 52662659
Alignment:
| Q |
125 |
tgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagttggcaatctagcatgaa |
224 |
Q |
| |
|
||||||||| ||| |||||| ||| ||||||| |||||| |||||||||||| || | |||||| || |||| || |||||||||||| |||| |
|
|
| T |
52662495 |
tgagaatgatttttattctcttttttacacaagatgcaagtttggtcacattgtatttcaactttactcaatttatctcacgttggcaatctacattgaa |
52662594 |
T |
|
| Q |
225 |
taatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaa |
289 |
Q |
| |
|
|| |||||||||||||||| ||| ||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
52662595 |
tagctaaccaagtaacaaacaaacactttggaggggcatgattattacaaatcatcttcctccaa |
52662659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 285
Target Start/End: Original strand, 52657451 - 52657611
Alignment:
| Q |
125 |
tgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagttggcaatctagcatgaa |
224 |
Q |
| |
|
|||||| || |||||||||| ||| ||||||| |||||| |||||||||||| || | |||||| || ||||||| |||||||||||| ||||| |
|
|
| T |
52657451 |
tgagaacgattttcattctcttttttacacaagatgcaagtttggtcacattgtatttcaactttactcagtttatcacacgttggcaatctacaatgaa |
52657550 |
T |
|
| Q |
225 |
taatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcct |
285 |
Q |
| |
|
|| | |||||||||||||||| | | |||||||| | |||||||||| ||||| ||||| |
|
|
| T |
52657551 |
tagttaaccaagtaacaaacaaatactttggaggaacaggattattacgaatcatcttcct |
52657611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 424
Target Start/End: Original strand, 30280773 - 30280833
Alignment:
| Q |
364 |
gccatcaacacttgaaatagtctttgctgcaccaaagacnnnnnnnattacccatgaagct |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30280773 |
gccatcaacacttgaaatagtctttgctgcaccaaagactttttttattacccatgaagct |
30280833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 18261317 - 18261733
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataat |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
18261317 |
caatgagactgaatatattgcaaaatagaatgccaatcgctagtattgaccgtcatattcatccatctcataacacatttccaaacagcatcagcataat |
18261416 |
T |
|
| Q |
108 |
cacaagnnnnnnngaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagt |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18261417 |
cacaagaaaaaaagaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagt |
18261516 |
T |
|
| Q |
208 |
tggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18261517 |
tggcaatctagcatgaataatcaaccaagtaacaaacaaacattttggaggggctggattattacatatcattttcctccaaccaacctttgtaaagtca |
18261616 |
T |
|
| Q |
308 |
cctcttaaagcattatgcattctcttaatagagaaattagcttgttgagaaatactgccatcaacacttgaaatagtctttgctgcaccaaagacnnnnn |
407 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18261617 |
cctcttaaagcattatacattctcttaatagagaaattagcttgttgaaaaatactgccatcaacacttgaaatagtctttgctgcaccaaagacttttt |
18261716 |
T |
|
| Q |
408 |
nnattacccatgaagct |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18261717 |
ttattacccatgaagct |
18261733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 33631397 - 33631815
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataat |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33631397 |
caatgagactgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataat |
33631496 |
T |
|
| Q |
108 |
cacaagnnnnnnngaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacatt--ggatacctactttaagcatcctatcacaa |
205 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33631497 |
cacaagaaaaaaagaggtgagaatgagtttcattctcctttgtacacaaaacgcaaacttggtcacattttggatacctactttaagcatcctatcacaa |
33631596 |
T |
|
| Q |
206 |
gttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33631597 |
gttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagt |
33631696 |
T |
|
| Q |
306 |
cacctcttaaagcattatgcattctcttaatagagaaattagcttgttgagaaatactgccatcaacacttgaaatagtctttgctgcaccaaagacnnn |
405 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33631697 |
cacctcttaaagcattatacattctcttaatagagaaattagcttgttgaaaaatacagccatcaacacttgaaatagtctttgctgcaccaaagacttt |
33631796 |
T |
|
| Q |
406 |
nnnnattacccatgaagct |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
33631797 |
ttttattacccatgaagct |
33631815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 33623293 - 33623686
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataat |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33623293 |
caatgagactgaatatattgcaaaatagaatgccaattgctagtattaaccgtcatattcatccatctcataacacctttccaaacagcatcagcataat |
33623392 |
T |
|
| Q |
108 |
cacaagnnnnnnngaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagt |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
33623393 |
cacaagaaaaaaagaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttacgcatcctatcataagt |
33623492 |
T |
|
| Q |
208 |
tggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33623493 |
tggcaatctagcatgaataatcaaccaagtaacaaacattcattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtca |
33623592 |
T |
|
| Q |
308 |
cctcttaaagcattatgcattctcttaatagagaaattagcttgttgagaaatactgccatcaacacttgaaatagtctttgctgcaccaaaga |
401 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33623593 |
cctcttaaagcattatacattctcttaatagagaaattagcttgttgaaaaatactgccatcaacacttgaaatagtctttgctgcaccaaaga |
33623686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 339
Target Start/End: Original strand, 29456686 - 29456828
Alignment:
| Q |
197 |
ctatcacaagttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacct |
296 |
Q |
| |
|
|||||| |||||||||||||| |||| ||| | ||||| |||||||| ||| |||||||| || ||||||||||| |||||||||||||| |||||| |
|
|
| T |
29456686 |
ctatcataagttggcaatctaccatgtatagctagccaagaaacaaacaaacaatttggaggagcaagattattacatgtcattttcctccaagcaacct |
29456785 |
T |
|
| Q |
297 |
ttgcaaagtcacctcttaaagcattatgcattctcttaataga |
339 |
Q |
| |
|
| ||||| ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
29456786 |
tggcaaaatcacctcttaagtcattatacattctcttaataga |
29456828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 355
Target Start/End: Original strand, 7478179 - 7478411
Alignment:
| Q |
122 |
aggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagttggcaatctagcat |
221 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||| |||||||| ||||| ||| | ||| || |||||| || | |||||||||||||||||| ||| |
|
|
| T |
7478179 |
aggtgagaatgtgtttcattctcttttttacataaaatgcacgtttggttacaatagattccaactttattcaatatttcacaagttggcaatctaccat |
7478278 |
T |
|
| Q |
222 |
gaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcatt |
321 |
Q |
| |
|
||||| | |||| ||||||||| |||||||||||| || || ||||||||||||| | || |||| | || || |||| ||||||||||||||||| |
|
|
| T |
7478279 |
gaatagctagccaaataacaaacaaacattttggaggagcagggttattacatatca-tctcatccagctcactttgacaaaatcacctcttaaagcatt |
7478377 |
T |
|
| Q |
322 |
atgcattctcttaatagagaaattagcttgttga |
355 |
Q |
| |
|
|| ||||| |||||||| ||| |||||||||||| |
|
|
| T |
7478378 |
atacattcgcttaatagcgaagttagcttgttga |
7478411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 424
Target Start/End: Complemental strand, 7280232 - 7279816
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataat |
107 |
Q |
| |
|
||||||| ||| | ||||| ||| ||||| ||||| |||||||||||||| ||||||| |||||||||||| |||||||| | ||| |||||||||| | |
|
|
| T |
7280232 |
caatgagactggacatattacaagatagattgccagttgctagtattgacactcatatttatccatctcatagcacctttccacacaacatcagcatatt |
7280133 |
T |
|
| Q |
108 |
cacaagnnnnnnngaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagt |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || || |||||||| || || ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7280132 |
cacaagaaaaaaacaggtgagaatgagtttcattctccttagtgcataaaatgcatacctgatcacattggatacctactttaagcatcctattacaagt |
7280033 |
T |
|
| Q |
208 |
tggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtca |
307 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7280032 |
tggcaatctagcatgaataattaaccaagtaacaaacaaacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtca |
7279933 |
T |
|
| Q |
308 |
cctcttaaagcattatgcattctcttaatagagaaattagcttgttgagaaatactgccatcaacacttgaaatagtctttgctgcaccaaagacnnnnn |
407 |
Q |
| |
|
|| |||| |||||||| ||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
7279932 |
ccgcttatagcattatacattctcttaatagagaaattagcttgttgaaaaacactaacattaacacttgaaataatctttgctgcaccaaagacttttt |
7279833 |
T |
|
| Q |
408 |
nnattacccatgaagct |
424 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7279832 |
ttattacccatgaagct |
7279816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 276
Target Start/End: Original strand, 41093278 - 41093547
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataat |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41093278 |
caatgagactgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttccaaacagcatcagcataat |
41093377 |
T |
|
| Q |
108 |
cacaagnnnnnnn-gaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaag |
206 |
Q |
| |
|
|| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41093378 |
cataagaaaaaaaagaggtgagaatgagtttcattctcatttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatactatcacaag |
41093477 |
T |
|
| Q |
207 |
ttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatat |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41093478 |
ttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatat |
41093547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 6 - 402
Target Start/End: Original strand, 39045175 - 39045567
Alignment:
| Q |
6 |
tgcaatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcata |
105 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| | || |||||||||||| |||||||||||||||||||| |||| || | ||||||||| || | |
|
|
| T |
39045175 |
tgcaatgagactgaacatattgcaaaatagactctcagctgctagtattgatgctcatattcatccatctcatagaacctgtccacacagcatcaacaaa |
39045274 |
T |
|
| Q |
106 |
atcacaagnnnnnnngaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaa |
205 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||||||||| | ||||||||| || ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39045275 |
ttcacaagtaaaaaataaatgagaatgactttcattctcctttgtacatagaatgcaaacctgatcacattggatgcctactttaagcatcctatcacaa |
39045374 |
T |
|
| Q |
206 |
gttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagt |
305 |
Q |
| |
|
|| ||| ||||| ||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
39045375 |
gtccgcagtctagaatgaataattaaccaagtaacaaacaaacattttggaggggcttgattattacatatcattttcccccaaccaacctttgcaaact |
39045474 |
T |
|
| Q |
306 |
cacctcttaaagcattatgcattctcttaatagagaaattagcttgttgagaaatactgccatcaacacttgaaatagtctttgctgcaccaaagac |
402 |
Q |
| |
|
| ||||||| ||||| |||||||| |||||||||||| |||||||| | | |||| ||| |||| ||||||| |||||||||||||||||||| |
|
|
| T |
39045475 |
ctactcttaatgcatt----attctcttgatagagaaattaacttgttgatacacactgtcattaacaattgaaatggtctttgctgcaccaaagac |
39045567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 271 - 424
Target Start/End: Original strand, 41099841 - 41099994
Alignment:
| Q |
271 |
acatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatgcattctcttaatagagaaattagcttgttgagaaatactgccatca |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||| |
|
|
| T |
41099841 |
acatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattctcttaatagataaattagcttgttgaaaactactgccatca |
41099940 |
T |
|
| Q |
371 |
acacttgaaatagtctttgctgcaccaaagacnnnnnnnattacccatgaagct |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41099941 |
acacttgaaatagtctttgctgcaccaaagactttttttattacccatgaagct |
41099994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 179 - 399
Target Start/End: Original strand, 41701324 - 41701534
Alignment:
| Q |
179 |
atacctactttaagcatcctatcacaagttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatca |
278 |
Q |
| |
|
|||| |||||||| |||||||| | |||||| |||||||||||||||||| |||||| |||||||| ||||||||||| | | |||||||||||||| |
|
|
| T |
41701324 |
atacatactttaaacatcctattagaagttgacaatctagcatgaataattaaccaaacaacaaacaaacattttggagagattatattattacatatca |
41701423 |
T |
|
| Q |
279 |
ttttcctccaaccaacctttgcaaagtcacctcttaaagcattatgcattctcttaatagagaaattagcttgttgagaaatactgccatcaacacttga |
378 |
Q |
| |
|
||||||||||| |||| || |||||||| |||||| |||||| |||||||||||||||||| ||||| | | ||| |||| ||||||||| |
|
|
| T |
41701424 |
ttttcctccaa----------caaactctcctcttaatacattatacattctattaatagagaaattagctcgttgaaatacactaccattaacacttga |
41701513 |
T |
|
| Q |
379 |
aatagtctttgctgcaccaaa |
399 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
41701514 |
aatagtctttgatgcaccaaa |
41701534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 122 - 299
Target Start/End: Original strand, 27179745 - 27179921
Alignment:
| Q |
122 |
aggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagttggcaatctagcat |
221 |
Q |
| |
|
|||||||||||| ||||| |||| ||| |||||||||| || | ||||||||| | ||||| |||||| | ||| ||||||||||| |||||||||| |
|
|
| T |
27179745 |
aggtgagaatgaatttcactctcttttttacacaaaatacacaattggtcacaaag-ataccaactttatttaacctgtcacaagttggtaatctagcat |
27179843 |
T |
|
| Q |
222 |
gaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttg |
299 |
Q |
| |
|
||||| ||||||| | |||||| ||||||||||||||| || ||||| || |||||||||||||||| ||| |||| |
|
|
| T |
27179844 |
gaatagctaaccaagaaccaaacaaacattttggaggggcagggttattgcaaatcattttcctccaacaaacttttg |
27179921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 342
Target Start/End: Original strand, 39790245 - 39790391
Alignment:
| Q |
196 |
cctatcacaagttggcaatctagcatgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacc |
295 |
Q |
| |
|
||||||| ||||||| |||||| ||| ||| || ||| ||||||||| |||||||||||| || || |||||| || ||||||||||||||| |||| |
|
|
| T |
39790245 |
cctatcataagttggtaatctaccatatatagccagccagataacaaacaaacattttggaggagcagggttattatatgtcattttcctccaactaacc |
39790344 |
T |
|
| Q |
296 |
tttgcaaagtcacctcttaaagcattatgcattctcttaatagagaa |
342 |
Q |
| |
|
|| | ||| |||||||||||| | |||| ||| | ||||| |||||| |
|
|
| T |
39790345 |
ttagaaaaatcacctcttaaatcgttatacatacgcttaagagagaa |
39790391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 38245882 - 38245794
Alignment:
| Q |
22 |
atattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataatcacaag |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||| ||| | ||| |||||||||| ||||||| |
|
|
| T |
38245882 |
atattgcaaaatagactgccaattgctagtattgacgttcatat---tccatctcatagcacattttcacacaacatcagcatattcacaag |
38245794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 13942475 - 13942336
Alignment:
| Q |
122 |
aggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagttggcaatctagcat |
221 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| || | | ||||||||| | |||||| ||||| | | | ||||||||||| ||||| | || |
|
|
| T |
13942475 |
aggtgagaatgagtttcattctctttttgacacaagatacgcaattggtcacaatagataccaactttgtttaacttgtcacaagttggtaatctggtat |
13942376 |
T |
|
| Q |
222 |
gaataatcaaccaagtaacaaacagacattttggaggggc |
261 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
13942375 |
gaatagataaccaagtaccaaacaaacattttggaggggc |
13942336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 240 - 402
Target Start/End: Complemental strand, 17564 - 17402
Alignment:
| Q |
240 |
caaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatgcattctcttaataga |
339 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
17564 |
caaacaaacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatacattcttttaataga |
17465 |
T |
|
| Q |
340 |
gaaattagcttgttgagaaatactgccatcaacacttgaaatagtctttgctgcaccaaagac |
402 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17464 |
gaaattagcttgttgaaaaatactgccatcaacacttgaaatagtctttgttgcaccaaagac |
17402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 25 - 328
Target Start/End: Original strand, 35164293 - 35164596
Alignment:
| Q |
25 |
ttgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataatcacaagnnnnnnngagg |
124 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||| | ||||||||||| | ||| ||||| || | ||| ||||| |||| ||||||| || |
|
|
| T |
35164293 |
ttgcagaatagactgccaattgctaatattgacgcttatattcatccaatttatagcacctgtccacacaacatcaacatattcacaagtaaaaaataga |
35164392 |
T |
|
| Q |
125 |
tgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagttggcaatctagcatgaa |
224 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35164393 |
tgagaatgagtttacttctcctttgtacacataatgcaaacctggtcacattggatacctactttaagcatcctatcacaagttagcaatctagcatgaa |
35164492 |
T |
|
| Q |
225 |
taatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatg |
324 |
Q |
| |
|
| || ||||||||| | |||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||| |
|
|
| T |
35164493 |
tgattaaccaagtagcgaacaaacatttcggagaggctgaattattacatatcattttcctccaaccaaccttagcaaaccctcctcttaatgcattata |
35164592 |
T |
|
| Q |
325 |
catt |
328 |
Q |
| |
|
|||| |
|
|
| T |
35164593 |
catt |
35164596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 122 - 355
Target Start/End: Complemental strand, 1161452 - 1161219
Alignment:
| Q |
122 |
aggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagttggcaatctagcat |
221 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||| |||||||| ||||| ||| | ||| || |||||| || || ||| |||||||||||||| ||| |
|
|
| T |
1161452 |
aggtgagaatgtgtttcattctcttttttacataaaatgcacgtttggttacaatagattccaactttattcaatctttcataagttggcaatctaccat |
1161353 |
T |
|
| Q |
222 |
gaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcatt |
321 |
Q |
| |
|
||||| | |||||||||||||| ||||||||||||||| || ||||||||| |||||||| |||| | || || |||| ||||||||||||||||| |
|
|
| T |
1161352 |
gaatagctagccaagtaacaaacaaacattttggaggggcagggttattacatgtcattttcatccagctcactttgacaaaatcacctcttaaagcatt |
1161253 |
T |
|
| Q |
322 |
atgcattctcttaatagagaaattagcttgttga |
355 |
Q |
| |
|
|| ||||| |||||||| ||| |||||||||||| |
|
|
| T |
1161252 |
atacattcgcttaatagcgaagttagcttgttga |
1161219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 339
Target Start/End: Original strand, 24318595 - 24318810
Alignment:
| Q |
122 |
aggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagttggcaatct--agc |
219 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||| || | | ||||||| | ||||| ||||| || | |||||||| |||||||||| ||| |
|
|
| T |
24318595 |
aggtgagagtgagtttcattctcttt---acacaaaatacacaatcggtcacaacgtataccaactttgtccaacttatcacaatttggcaatctctagc |
24318691 |
T |
|
| Q |
220 |
atgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagca |
319 |
Q |
| |
|
||| ||| |||||| ||| ||||| |||||| ||||| |||| ||||| || |||||||| || |||| ||||||| |||| ||||||||||| || |
|
|
| T |
24318692 |
atgtatagctaaccaattaataaacaaacattt-ggaggaactgggttattgcaaatcatttttcttcaactaacctttacaaaatcacctcttaagaca |
24318790 |
T |
|
| Q |
320 |
ttatgcattctcttaataga |
339 |
Q |
| |
|
|||| |||| |||| ||||| |
|
|
| T |
24318791 |
ttatacattttcttgataga |
24318810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 28561180 - 28561376
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataat |
107 |
Q |
| |
|
||||||| ||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||| |||| | |
|
|
| T |
28561180 |
caatgagactggatatattgcaaaatagattgccaattgcttatattgacactcatattcatccatctcatagcacctttctaaacaacatcatcatatt |
28561279 |
T |
|
| Q |
108 |
cacaagnnnnnnngaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcaca |
204 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28561280 |
cacaagaaaaaaaaaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacctggtcacattggatacctactttaagcatcctctcaca |
28561376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 28566678 - 28566874
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataat |
107 |
Q |
| |
|
||||||| ||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||| |||| | |
|
|
| T |
28566678 |
caatgagactggatatattgcaaaatagattgccaattgcttatattgacactcatattcatccatctcatagcacctttctaaacaacatcatcatatt |
28566777 |
T |
|
| Q |
108 |
cacaagnnnnnnngaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcaca |
204 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28566778 |
cacaagaaaaaaaaaggtgagaatgagtttcattctcctttgtacacaaaatgcaaacctggtcacattggatacctactttaagcatcctctcaca |
28566874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 28574288 - 28574487
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattcatccatctcataacacctttctaaacagcatcagcataat |
107 |
Q |
| |
|
||||||| ||| | ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || |||| | |
|
|
| T |
28574288 |
caatgagactggacatattgcaaaatagattgccaattgctagtattgacactcatattcatccatctcatagcacctttctaaacaacaacatcatatt |
28574387 |
T |
|
| Q |
108 |
cacaagnnnnnnngag---gtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcaca |
204 |
Q |
| |
|
|||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28574388 |
cacaagaagaaaaaaaaaagtgagattgagtttcattctcctttgtacacaaaatgcaaacctggtcacattggatacctactttaagcatcctctcaca |
28574487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 342
Target Start/End: Complemental strand, 6839698 - 6839481
Alignment:
| Q |
125 |
tgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagttggcaatctagcatgaa |
224 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||| |||| | |||| ||||||| || | | |||| || ||||||||||||||| |||||| |||| | |
|
|
| T |
6839698 |
tgagaatgagtttcattctcttttttgcacaaagtgcacaattgggcacattgtatctcaaatttactcaacctatcacaagttggtaatctatcatgta |
6839599 |
T |
|
| Q |
225 |
taatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcattatg |
324 |
Q |
| |
|
|| || |||||||||||| | | |||||||||| || | ||||||||| ||| ||||||||||| |||||| | ||| |||||||||||| | |||| |
|
|
| T |
6839598 |
tagccagccaagtaacaaataaatattttggaggagcatggttattacatgtcaatttcctccaactaaccttgggaaaatcacctcttaaatcgttata |
6839499 |
T |
|
| Q |
325 |
cattctcttaatagagaa |
342 |
Q |
| |
|
||| | ||||| |||||| |
|
|
| T |
6839498 |
catacgcttaagagagaa |
6839481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 465734 - 465794
Alignment:
| Q |
8 |
caatgaggctgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattca |
68 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
465734 |
caatgagactgaatatattgcaaaatagaatgccaattgctagtattgaccgtcatattca |
465794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 141 - 315
Target Start/End: Complemental strand, 11815126 - 11814953
Alignment:
| Q |
141 |
tctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagttggcaatctagcatgaataatcaaccaagtaac |
240 |
Q |
| |
|
|||||||| |||||||||| || | || |||||| || ||||| || || || ||| ||||||||||||||||||| | ||||| | |||||| |||| |
|
|
| T |
11815126 |
tctcctttttacacaaaatacacaattagtcacaatgtataccaaccttgttcaacctctcacaagttggcaatctagaaagaatagttaaccaattaac |
11815027 |
T |
|
| Q |
241 |
aaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaa |
315 |
Q |
| |
|
||||| ||||| ||||||||| || ||| | || |||||||||||||||| | | |||||||| ||||||||||| |
|
|
| T |
11815026 |
aaacaaacattatggaggggcagg-ttacttcaaatcattttcctccaactagcttttgcaaaatcacctcttaa |
11814953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 355
Target Start/End: Complemental strand, 49821414 - 49821284
Alignment:
| Q |
221 |
tgaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctcttaaagcat |
320 |
Q |
| |
|
||||| || ||||||||||||| || ||| |||||||||||| ||||| ||| ||||| |||||||||||| ||| |||| || |||||||| ||| |
|
|
| T |
49821414 |
tgaatgattaaccaagtaacaagcaaacactttggaggggctagattactacgtatca----cctccaaccaacttttacaaattctcctcttaatacat |
49821319 |
T |
|
| Q |
321 |
tatgcattctcttaatagagaaattagcttgttga |
355 |
Q |
| |
|
||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
49821318 |
tatacattctcttaatagatatattagcttgttga |
49821284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 313
Target Start/End: Complemental strand, 38670566 - 38670375
Alignment:
| Q |
122 |
aggtgagaatgagtttcattctcctttgtacacaaaatgcaaacttggtcacattggatacctactttaagcatcctatcacaagttggcaatctagcat |
221 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| ||||| | | |||||| |||| ||||| ||| || || ||| ||||||||| ||||||| |||| |
|
|
| T |
38670566 |
aggtaagaatgagtttcattctcctttttacccaaaacatacaattggtctcattatataccaactatattcaacctgtcacaagtttgcaatcttgcat |
38670467 |
T |
|
| Q |
222 |
gaataatcaaccaagtaacaaacagacattttggaggggctggattattacatatcattttcctccaaccaacctttgcaaagtcacctctt |
313 |
Q |
| |
|
||||| |||||| ||||||||| ||||||||||||| | | || || || ||||||||||||||| ||| |||||||| ||| ||||| |
|
|
| T |
38670466 |
gaatagcgaaccaattaacaaacaaacattttggagggacatggttgttgcaaatcattttcctccaattaacttttgcaaactcaactctt |
38670375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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