View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_81 (Length: 237)
Name: NF9319_low_81
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 52760824 - 52761031
Alignment:
| Q |
1 |
tctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760824 |
tctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctgg |
52760923 |
T |
|
| Q |
101 |
agcatgcgttttagtaacacttggcgccgaagcatgagcggtgctggtttcacttggtgccggagcatgggtgctggtagcgcttggtgcaggagcatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760924 |
agcatgcgttttagtaacacttggcgccgaagcatgagcggtgctggtttcacttggtgccggagcatgggtgctggtagcgcttggtgcaggagcatgg |
52761023 |
T |
|
| Q |
201 |
ttgctggt |
208 |
Q |
| |
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|||||||| |
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| T |
52761024 |
ttgctggt |
52761031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 52796987 - 52796883
Alignment:
| Q |
1 |
tctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctgg |
100 |
Q |
| |
|
|||||| | |||||||||||||||| ||||||||||||||| ||| |||||| | ||||||| ||||||||||| ||| ||| ||||||||||| || |
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| T |
52796987 |
tctaaatagcaaagcttcctaagacaaaagccaccacaacactgaccccaacagacccactcatcctcgcagaacccgaacgattaggacttggtgaagg |
52796888 |
T |
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| Q |
101 |
agcat |
105 |
Q |
| |
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||||| |
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|
| T |
52796887 |
agcat |
52796883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 52798877 - 52798774
Alignment:
| Q |
1 |
tctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatgatgaggacttggtgctgg |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| | | |||| || |||||||||| || | |||||| ||||| | |||||| || || || |
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| T |
52798877 |
tctaaaaagcaaaggttcctaagaccaaagccaccacaacactaacaccatcagaaccactcaacctggtagaacccgaatgtttaggactaggcgccgg |
52798778 |
T |
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| Q |
101 |
agca |
104 |
Q |
| |
|
|||| |
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|
| T |
52798777 |
agca |
52798774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 38710649 - 38710731
Alignment:
| Q |
1 |
tctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaatctcgcagaaccagaatga |
83 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| | | ||||||| |||||||||| ||| |||||| |||||| |
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| T |
38710649 |
tctaaaaagcaaagcttcctaagaccaaagccaccacaacactcacaccaacaaaaccactcaacctcctagaacccgaatga |
38710731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42094281 - 42094344
Alignment:
| Q |
1 |
tctaaaaaacaaagcttcctaagaccaaagccaccacaacattgataccaacataaccactcaa |
64 |
Q |
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|||||||| ||| ||||||||| ||||| |||||||||||||||| ||||||| |||||||||| |
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|
| T |
42094281 |
tctaaaaagcaaggcttcctaataccaatgccaccacaacattgacaccaacagaaccactcaa |
42094344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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