View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9319_low_85 (Length: 227)

Name: NF9319_low_85
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9319_low_85
NF9319_low_85
[»] chr4 (45 HSPs)
chr4 (70-227)||(3937863-3938020)
chr4 (73-227)||(45067089-45067243)
chr4 (1-66)||(38209626-38209691)
chr4 (1-66)||(47128994-47129059)
chr4 (1-66)||(54780784-54780849)
chr4 (75-227)||(25110008-25110159)
chr4 (1-66)||(5128877-5128942)
chr4 (1-66)||(10978907-10978972)
chr4 (1-66)||(34768609-34768674)
chr4 (1-66)||(37777258-37777323)
chr4 (1-66)||(43455566-43455631)
chr4 (6-66)||(37514671-37514731)
chr4 (1-66)||(2790776-2790841)
chr4 (1-66)||(32915392-32915457)
chr4 (1-66)||(35779360-35779425)
chr4 (1-66)||(40089523-40089588)
chr4 (5-66)||(48209251-48209312)
chr4 (1-66)||(4167926-4167991)
chr4 (1-66)||(13460214-13460279)
chr4 (1-66)||(34027586-34027651)
chr4 (1-66)||(54083277-54083342)
chr4 (11-66)||(32128601-32128656)
chr4 (5-66)||(1105543-1105604)
chr4 (25-66)||(10428232-10428273)
chr4 (26-66)||(17679432-17679472)
chr4 (1-53)||(23509846-23509898)
chr4 (68-124)||(47159815-47159871)
chr4 (22-66)||(51964736-51964780)
chr4 (68-123)||(51806216-51806271)
chr4 (1-66)||(16845028-16845093)
chr4 (1-66)||(16882430-16882495)
chr4 (1-45)||(24969444-24969488)
chr4 (1-66)||(19498511-19498574)
chr4 (1-39)||(55255276-55255314)
chr4 (1-66)||(2135356-2135421)
chr4 (68-117)||(5674265-5674314)
chr4 (1-66)||(27112037-27112102)
chr4 (1-66)||(52468293-52468358)
chr4 (2-54)||(35465115-35465167)
chr4 (6-66)||(36178684-36178744)
chr4 (1-45)||(38352311-38352355)
chr4 (36-66)||(51691950-51691980)
chr4 (1-66)||(10042035-10042100)
chr4 (5-66)||(36118493-36118554)
chr4 (1-66)||(37744945-37745010)
[»] chr7 (33 HSPs)
chr7 (68-227)||(18260995-18261154)
chr7 (72-227)||(33622975-33623130)
chr7 (68-227)||(33631075-33631234)
chr7 (1-66)||(8171574-8171639)
chr7 (1-66)||(10955486-10955551)
chr7 (1-66)||(12596322-12596387)
chr7 (5-66)||(18776801-18776862)
chr7 (1-66)||(20091316-20091381)
chr7 (1-66)||(29077222-29077287)
chr7 (1-66)||(47985005-47985070)
chr7 (3-66)||(9021835-9021898)
chr7 (1-66)||(23551106-23551171)
chr7 (1-66)||(24525720-24525785)
chr7 (1-66)||(48983879-48983944)
chr7 (4-66)||(28749715-28749776)
chr7 (1-58)||(8239689-8239746)
chr7 (68-125)||(11698432-11698489)
chr7 (1-66)||(38414911-38414976)
chr7 (5-66)||(10329445-10329506)
chr7 (1-66)||(12981328-12981393)
chr7 (1-66)||(19692096-19692161)
chr7 (21-66)||(26254015-26254060)
chr7 (68-125)||(7316997-7317056)
chr7 (63-111)||(7477752-7477800)
chr7 (1-45)||(25010435-25010479)
chr7 (22-66)||(33162374-33162418)
chr7 (3-66)||(23859077-23859140)
chr7 (1-66)||(2611297-2611362)
chr7 (9-66)||(6765716-6765773)
chr7 (1-66)||(7398453-7398518)
chr7 (1-66)||(36891580-36891645)
chr7 (14-54)||(40357413-40357453)
chr7 (11-66)||(23744808-23744863)
[»] chr3 (37 HSPs)
chr3 (68-227)||(3422906-3423065)
chr3 (68-227)||(30272735-30272892)
chr3 (68-227)||(43191233-43191393)
chr3 (153-227)||(22164212-22164286)
chr3 (1-66)||(21582776-21582841)
chr3 (1-66)||(54619239-54619304)
chr3 (1-66)||(34290672-34290737)
chr3 (1-66)||(47467689-47467754)
chr3 (1-66)||(3953932-3953997)
chr3 (1-66)||(29620424-29620489)
chr3 (1-66)||(42098806-42098871)
chr3 (2-66)||(38681129-38681193)
chr3 (1-66)||(8073374-8073439)
chr3 (5-66)||(27078605-27078666)
chr3 (5-66)||(27084402-27084463)
chr3 (1-66)||(44708482-44708547)
chr3 (1-66)||(53149350-53149415)
chr3 (68-124)||(579831-579887)
chr3 (11-66)||(36716061-36716116)
chr3 (4-66)||(36605973-36606034)
chr3 (1-66)||(37168372-37168437)
chr3 (68-125)||(52657150-52657207)
chr3 (5-66)||(53506920-53506981)
chr3 (11-66)||(54407194-54407249)
chr3 (1-66)||(9878723-9878788)
chr3 (1-66)||(43207274-43207338)
chr3 (1-66)||(50939269-50939334)
chr3 (70-117)||(13165816-13165863)
chr3 (2-66)||(18372485-18372553)
chr3 (68-122)||(47361928-47361983)
chr3 (68-130)||(52662040-52662102)
chr3 (1-66)||(8420331-8420396)
chr3 (1-66)||(54574863-54574928)
chr3 (1-66)||(50258659-50258725)
chr3 (5-66)||(28689397-28689458)
chr3 (1-66)||(32319191-32319256)
chr3 (1-45)||(48157144-48157188)
[»] chr6 (25 HSPs)
chr6 (68-219)||(7213109-7213260)
chr6 (1-66)||(13727435-13727500)
chr6 (1-66)||(21479499-21479564)
chr6 (1-66)||(19737728-19737793)
chr6 (1-66)||(21280550-21280615)
chr6 (68-125)||(1161834-1161891)
chr6 (1-66)||(20711756-20711821)
chr6 (1-66)||(24711035-24711100)
chr6 (1-66)||(27788724-27788789)
chr6 (1-66)||(33774122-33774187)
chr6 (68-227)||(35163976-35164133)
chr6 (1-66)||(28075788-28075853)
chr6 (4-66)||(1155885-1155947)
chr6 (1-66)||(30832560-30832625)
chr6 (1-66)||(4036953-4037018)
chr6 (22-66)||(27314215-27314259)
chr6 (1-66)||(17353959-17354024)
chr6 (1-66)||(34397862-34397927)
chr6 (1-66)||(2477620-2477685)
chr6 (1-66)||(6159443-6159508)
chr6 (1-66)||(20611795-20611860)
chr6 (1-54)||(21183723-21183776)
chr6 (5-53)||(235275-235323)
chr6 (75-119)||(3660549-3660593)
chr6 (2-46)||(27994775-27994819)
[»] chr2 (28 HSPs)
chr2 (68-227)||(465413-465571)
chr2 (1-66)||(3155218-3155283)
chr2 (1-66)||(4505895-4505960)
chr2 (1-66)||(6965008-6965073)
chr2 (1-66)||(7162785-7162850)
chr2 (1-66)||(9046030-9046095)
chr2 (1-66)||(24410438-24410503)
chr2 (1-66)||(29939898-29939963)
chr2 (1-66)||(3953007-3953072)
chr2 (5-66)||(8907115-8907176)
chr2 (1-66)||(12337484-12337549)
chr2 (1-66)||(26716129-26716194)
chr2 (1-66)||(10762601-10762666)
chr2 (16-66)||(34693991-34694041)
chr2 (16-66)||(34716403-34716453)
chr2 (1-66)||(16097009-16097074)
chr2 (1-66)||(27506776-27506841)
chr2 (1-66)||(28425746-28425811)
chr2 (26-66)||(5952751-5952791)
chr2 (68-165)||(6840041-6840141)
chr2 (1-66)||(12134076-12134141)
chr2 (1-66)||(37182671-37182736)
chr2 (2-66)||(24035581-24035645)
chr2 (26-66)||(40636164-40636204)
chr2 (1-66)||(38400799-38400864)
chr2 (69-120)||(24474393-24474444)
chr2 (1-66)||(11912793-11912858)
chr2 (6-54)||(22727550-22727598)
[»] chr8 (30 HSPs)
chr8 (69-227)||(28566357-28566515)
chr8 (69-227)||(28560859-28561017)
chr8 (1-66)||(30883331-30883396)
chr8 (1-66)||(45475819-45475884)
chr8 (1-66)||(2952257-2952322)
chr8 (5-66)||(5860780-5860841)
chr8 (1-58)||(13534730-13534787)
chr8 (1-58)||(13624270-13624327)
chr8 (1-66)||(3048553-3048618)
chr8 (1-66)||(10917393-10917458)
chr8 (1-66)||(23606665-23606730)
chr8 (1-66)||(23798297-23798362)
chr8 (1-66)||(37430194-37430259)
chr8 (1-66)||(42600784-42600849)
chr8 (1-66)||(7944558-7944623)
chr8 (68-125)||(1946065-1946122)
chr8 (1-66)||(5942698-5942763)
chr8 (1-66)||(8102914-8102979)
chr8 (5-66)||(41879187-41879248)
chr8 (69-163)||(28573980-28574074)
chr8 (1-66)||(39332441-39332506)
chr8 (193-227)||(28574091-28574125)
chr8 (1-66)||(5721561-5721626)
chr8 (5-66)||(11290190-11290251)
chr8 (1-66)||(25561530-25561594)
chr8 (5-66)||(34789898-34789959)
chr8 (68-122)||(1982200-1982255)
chr8 (1-66)||(5973143-5973208)
chr8 (1-66)||(41677210-41677275)
chr8 (1-53)||(15167464-15167516)
[»] chr5 (35 HSPs)
chr5 (68-227)||(7280414-7280573)
chr5 (1-66)||(34756399-34756464)
chr5 (1-66)||(16592107-16592172)
chr5 (1-66)||(19523201-19523266)
chr5 (5-66)||(36187912-36187973)
chr5 (72-227)||(39044860-39045014)
chr5 (1-66)||(9364293-9364358)
chr5 (1-66)||(30854331-30854396)
chr5 (1-66)||(15480122-15480187)
chr5 (1-66)||(16799360-16799425)
chr5 (1-66)||(23284095-23284160)
chr5 (1-66)||(27079013-27079078)
chr5 (1-66)||(28822375-28822440)
chr5 (4-66)||(31194645-31194706)
chr5 (1-66)||(2274892-2274957)
chr5 (1-66)||(16198827-16198892)
chr5 (5-66)||(22986591-22986652)
chr5 (1-66)||(27924084-27924149)
chr5 (5-66)||(38869396-38869457)
chr5 (1-66)||(40389569-40389634)
chr5 (70-125)||(36874324-36874379)
chr5 (4-66)||(7670929-7670991)
chr5 (2-66)||(36868909-36868973)
chr5 (1-66)||(41911650-41911715)
chr5 (4-66)||(31881467-31881528)
chr5 (1-66)||(1366559-1366624)
chr5 (21-66)||(7338021-7338066)
chr5 (3-66)||(2024675-2024738)
chr5 (68-119)||(13943206-13943257)
chr5 (3-66)||(26718982-26719045)
chr5 (3-66)||(26988726-26988789)
chr5 (68-124)||(39790064-39790122)
chr5 (80-130)||(27179309-27179359)
chr5 (1-66)||(14318418-14318483)
chr5 (1-66)||(34425905-34425970)
[»] chr1 (38 HSPs)
chr1 (1-66)||(5316693-5316758)
chr1 (1-66)||(6771804-6771869)
chr1 (1-66)||(14146313-14146378)
chr1 (1-66)||(23185440-23185505)
chr1 (1-66)||(5027562-5027627)
chr1 (1-66)||(19955730-19955795)
chr1 (1-66)||(44655754-44655819)
chr1 (1-66)||(3406431-3406496)
chr1 (1-66)||(3440324-3440389)
chr1 (1-66)||(4971653-4971718)
chr1 (1-66)||(9173058-9173123)
chr1 (1-66)||(9181040-9181105)
chr1 (1-66)||(27559650-27559715)
chr1 (2-66)||(16140069-16140133)
chr1 (11-66)||(21740972-21741027)
chr1 (75-169)||(19176933-19177027)
chr1 (1-66)||(1366913-1366978)
chr1 (1-66)||(50881443-50881508)
chr1 (1-56)||(51607485-51607540)
chr1 (1-66)||(17168969-17169034)
chr1 (1-66)||(40501825-40501890)
chr1 (13-66)||(35392295-35392348)
chr1 (1-66)||(38547071-38547136)
chr1 (1-54)||(41697184-41697237)
chr1 (101-172)||(49596888-49596959)
chr1 (1-39)||(27906779-27906817)
chr1 (2-63)||(5533326-5533387)
chr1 (9-54)||(6889632-6889677)
chr1 (9-54)||(6891478-6891523)
chr1 (1-66)||(39134758-39134823)
chr1 (69-157)||(50715620-50715709)
chr1 (70-130)||(8239873-8239933)
chr1 (5-53)||(13913530-13913578)
chr1 (14-54)||(34247066-34247106)
chr1 (1-43)||(44895665-44895707)
chr1 (1-66)||(6221691-6221756)
chr1 (5-66)||(33170776-33170837)
chr1 (5-66)||(38853539-38853600)
[»] scaffold0070 (1 HSPs)
scaffold0070 (1-66)||(1345-1410)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-66)||(106540-106605)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-66)||(206525-206590)
[»] scaffold1590 (1 HSPs)
scaffold1590 (1-66)||(294-359)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-66)||(38927-38992)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-49)||(181921-181969)
[»] scaffold0002 (1 HSPs)
scaffold0002 (70-117)||(141125-141172)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-66)||(173546-173611)
[»] scaffold0182 (1 HSPs)
scaffold0182 (12-66)||(24029-24083)
[»] scaffold0227 (1 HSPs)
scaffold0227 (5-71)||(16033-16099)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-53)||(230908-230960)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 70 - 227
Target Start/End: Original strand, 3937863 - 3938020
Alignment:
Q  70 ttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaac 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3937863 ttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaac 3937962  T
Q  170 aaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3937963 aaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 3938020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 73 - 227
Target Start/End: Complemental strand, 45067243 - 45067089
Alignment:
Q  73 tggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaacaaa 172  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||||    
T  45067243 tggtaaatagagataactttcactaaccaaaatagttattacaaactacatggaagcaggaaacacttaaaccaagaaacaagagctaaactcaaacaaa 45067144  T
Q  173 caaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45067143 caaaaagaaccattagtctcgcacccgaatcatcagagtttgcaccttcttgaat 45067089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38209691 - 38209626
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38209691 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 38209626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 47128994 - 47129059
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47128994 gttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatt 47129059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 54780784 - 54780849
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54780784 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttgtatt 54780849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 25110159 - 25110008
Alignment:
Q  75 gtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaacaaaca 174  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||   ||||||  |||| ||||||||||||| || || |||| ||||    
T  25110159 gtaaatagagataactttcgttaaccaaaacagttattacaaactacatggaatcgtgaaacacctaaacaaagaaacaagagccaaacttaaactaaca 25110060  T
Q  175 aaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    | || | | | ||| ||| ||  |||||||| |||| ||||||||||||||||    
T  25110059 agaa-agctactagtctcacaaacgaatcattagaggttgcaccttcttgaat 25110008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5128942 - 5128877
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  5128942 gttcctcatgtatacggtagtcattttcacctctgggtgcactgcatatatacggcaccttgtatt 5128877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10978907 - 10978972
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  10978907 gttcctcatgtatacggtagtcattttcacttctgggtgtaccgcatatatacgacaccttgtatt 10978972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34768674 - 34768609
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  34768674 gttcctcatgtatacggtaatcattttcacctctgggtgtaccgcatatatacggcaccttatatt 34768609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37777323 - 37777258
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  37777323 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatt 37777258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43455631 - 43455566
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  43455631 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatt 43455566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 37514671 - 37514731
Alignment:
Q  6 tcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37514671 tcatgtatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttgtatt 37514731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2790841 - 2790776
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  2790841 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatt 2790776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32915392 - 32915457
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||    
T  32915392 gttcctcatgtatacggtaatcatttttacctctgggtgtaccacatatatacggcaccttgtatt 32915457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35779425 - 35779360
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||    
T  35779425 gttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacgacaccttgtatt 35779360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40089523 - 40089588
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  40089523 gttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatt 40089588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 48209251 - 48209312
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  48209251 ctcatgtatacggtagtcatattcacatctgggtgtaccgcatatatacggcaccttgtatt 48209312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4167991 - 4167926
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||| |||||| |||||||||| |||||||| ||||||||||||||||||||||||    
T  4167991 gttcctcatgtataaggtagtgattttcacctttgggtgtatcgcatatatacggcaccttgtatt 4167926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 13460214 - 13460279
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||| || |||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  13460214 gttccttatgtatacggtagtcattttcacatctgggtataccgcatatatacgacaccttgtatt 13460279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34027586 - 34027651
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  34027586 gttcctcatgtataccgtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatt 34027651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 54083342 - 54083277
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||| | || |||||||||||||||||||||||||||| ||||    
T  54083342 gttcctcatgtatacggtagtcatttttatctttgggtgtaccgcatatatacggcaccttatatt 54083277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 32128601 - 32128656
Alignment:
Q  11 tatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  32128601 tatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatt 32128656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 1105543 - 1105604
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| |||| ||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  1105543 ctcatgtatatggtagtcattttcacctctaggtgtaccgcatatatacgataccttgtatt 1105604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 10428273 - 10428232
Alignment:
Q  25 tttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10428273 tttcacctctgggtgtaccgcatatatacggcaccttgtatt 10428232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 17679432 - 17679472
Alignment:
Q  26 ttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17679432 ttcacctctgggtgtaccgcatatatacggcaccttgtatt 17679472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23509898 - 23509846
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatac 53  Q
    ||||||||| | |||||||||||||||||||||| ||||||||||||||||||    
T  23509898 gttcctcatgtctacggtagtcattttcacctctaggtgtaccgcatatatac 23509846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 47159815 - 47159871
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatg 124  Q
    ||||||||||||||||||||  ||||| ||||||||||| |||||||||||||||||    
T  47159815 ttttttggtaaatagagataaatttcactaaccaaaacatttattacaaactacatg 47159871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 51964736 - 51964780
Alignment:
Q  22 cattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  51964736 cattttcacctctgggtgtatcgcatatatacggcaccttgtatt 51964780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 51806216 - 51806271
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacat 123  Q
    |||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  51806216 ttttttgggaaaaagagataactttcattaaccaaaacagttattacaatctacat 51806271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16845028 - 16845093
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||  |||||||||  |||||||||| |||||| ||||    
T  16845028 gttcctcatgtatacggtagtcattttcaccgttgggtgtactacatatatacgacaccttatatt 16845093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16882495 - 16882430
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| |||| ||||||||||||||||||||| | ||||||||| ||||| |||||||||| ||||    
T  16882495 gttccccatacatacggtagtcattttcaccttttggtgtaccgtatatacacggcaccttatatt 16882430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24969444 - 24969488
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgc 45  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||    
T  24969444 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgc 24969488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19498511 - 19498574
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||| |||||||||||||||| ||| ||||||||  |||||||||||||| ||||    
T  19498511 gttcctcatgtatacagtagtcattttcacctttggctgtaccgc--atatacggcaccttatatt 19498574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 55255276 - 55255314
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtg 39  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  55255276 gttcctcatgtatacggtagtcattttcacctctgggtg 55255314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2135421 - 2135356
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||||| |||| || || |||| ||| |||| |||||||||||| |||||||||||    
T  2135421 gttcctcatatatacgatagtgatgtttacctttggatgtatcgcatatatacgacaccttgtatt 2135356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 5674314 - 5674265
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaa 117  Q
    |||||||||||||||||||   |||||||||||||||||| |||||||||    
T  5674314 ttttttggtaaatagagatgcatttcattaaccaaaacagatattacaaa 5674265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27112037 - 27112102
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||| |||||||| | | |||||| |||||||||| | |||||||||||    
T  27112037 gttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatt 27112102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 52468293 - 52468358
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||  |||||||||| |||||||||| ||| ||||   ||||||||||||||||||||||    
T  52468293 gttcctcatgcatacggtagtgattttcacctttggatgtataacatatatacggcaccttgtatt 52468358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 35465115 - 35465167
Alignment:
Q  2 ttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacg 54  Q
    |||||||| ||||||||||| |||||||| | | |||||||||||||||||||    
T  35465115 ttcctcatgtatacggtagttattttcacttttaggtgtaccgcatatatacg 35465167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 36178684 - 36178744
Alignment:
Q  6 tcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||| |||| |||||| |||||||| | |||||||| |||||||||||| |||||||||||    
T  36178684 tcatgtataaggtagtgattttcacatttgggtgtatcgcatatatacgacaccttgtatt 36178744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38352355 - 38352311
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgc 45  Q
    ||||||||| || ||||||||||||||||||| ||||||||||||    
T  38352355 gttcctcatgtacacggtagtcattttcacctttgggtgtaccgc 38352311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 51691980 - 51691950
Alignment:
Q  36 ggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||||||||||||||||||||    
T  51691980 ggtgtaccgcatatatacggcaccttgtatt 51691950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10042100 - 10042035
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| | ||||||||||| |||||||| | | |||||| | |||| |||||||||||||||||    
T  10042100 gttcctcctgtatacggtagtgattttcacatttaggtgtatcacatacatacggcaccttgtatt 10042035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 36118554 - 36118493
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| ||||||||||| |||||||  | |||||||| | |||||||||| |||||||||||    
T  36118554 ctcatgtatacggtagtgattttcatatttgggtgtatcacatatatacgacaccttgtatt 36118493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37745010 - 37744945
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||  ||||||||||| |||||||||| ||| |||| ||||||||| || |||||| ||||    
T  37745010 gttcctcaagtatacggtagtgattttcacctttggatgtatcgcatatatgcgacaccttatatt 37744945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 18260995 - 18261154
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaa 167  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18260995 ttttttggtaaatagagataactttcattaaccaaaacagatattacaaactacatggaatcaggaaacactaaaaccaagaaacaagagctaagctcaa 18261094  T
Q  168 acaaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18261095 acaaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 18261154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 72 - 227
Target Start/End: Original strand, 33622975 - 33623130
Alignment:
Q  72 ttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaacaa 171  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33622975 ttggtaaatagagatatttttcattaaccaaaacagatattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaacaa 33623074  T
Q  172 acaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33623075 acaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 33623130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 33631075 - 33631234
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaa 167  Q
    ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  33631075 ttttttgataaatagagataactttcattaaccaaaagagttattacaaactacatggaatcaggaaagactaaaaccaagaaacaagagttaagctcaa 33631174  T
Q  168 acaaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33631175 acaaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 33631234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 8171639 - 8171574
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8171639 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatt 8171574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10955486 - 10955551
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  10955486 gttcctcatgtatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttatatt 10955551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12596387 - 12596322
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12596387 gttcctcatgcatacggtagtcattttcacctctgggtgtaccacatatatacggcaccttgtatt 12596322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 18776862 - 18776801
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18776862 ctcatgtatacggtagtcattttcacatctgggtgtaccgcatatatacggcaccttgtatt 18776801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20091381 - 20091316
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  20091381 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatt 20091316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29077222 - 29077287
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  29077222 gttcctcatgtatacggtagtcattttcacctcttggtgtaccgcatatatacgacaccttgtatt 29077287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 47985070 - 47985005
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  47985070 gttcctcatgtatacggtggtcattttcacctttgggtgtaccgcatatatacggcaccttatatt 47985005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 9021898 - 9021835
Alignment:
Q  3 tcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  9021898 tcctcatgtatacggtagtgattttcacctttgggtgtaccgcatatatacggcacattgtatt 9021835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23551171 - 23551106
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||| |||||| ||||    
T  23551171 gttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatt 23551106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 24525785 - 24525720
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||    
T  24525785 gttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatacacggcaccttatatt 24525720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 48983944 - 48983879
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||    
T  48983944 gttcctcatgtatacggtagttattttcacctttgggtgtaccgcatatatacgacaccttatatt 48983879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 28749715 - 28749776
Alignment:
Q  4 cctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  28749715 cctcatgtatacggtagt-attttcacatctgagtgtaccgcatatatacggcaccttgtatt 28749776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8239689 - 8239746
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcac 58  Q
    ||||||||||||||||||| |||||||||| | |||||||||| ||||||||||||||    
T  8239689 gttcctcatatatacggtaatcattttcacatttgggtgtaccacatatatacggcac 8239746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 11698432 - 11698489
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatgg 125  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||    
T  11698432 ttttttggtaaatagagataactttcattaaccgaaacaattattacaaactatatgg 11698489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38414976 - 38414911
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||| |||||||||||||||| |||||||||| |||||||||| |||||| ||||    
T  38414976 gttcctcatgtatacagtagtcattttcacctttgggtgtaccacatatatacgtcaccttatatt 38414911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 10329506 - 10329445
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| |||||||||||||||||||||| ||||| | || ||||||||||||||||| ||||    
T  10329506 ctcatgtatacggtagtcattttcacctttgggttttcctcatatatacggcaccttatatt 10329445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12981328 - 12981393
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||||||||| ||||| |||||||||| || ||||||||| |||||| || ||||||||||    
T  12981328 gttcctcatatatacagtagtgattttcacctttgtgtgtaccgcgtatatatggaaccttgtatt 12981393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19692096 - 19692161
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||  |||||||||||||| | ||||||||||||||||| |||||||| ||||    
T  19692096 gttcctcatgtatacgaaagtcattttcacctttaggtgtaccgcatatatatggcaccttatatt 19692161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 26254015 - 26254060
Alignment:
Q  21 tcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| || |||||||||||||||||||||||||||||||||    
T  26254015 tcattttcatctttgggtgtaccgcatatatacggcaccttgtatt 26254060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 7316997 - 7317056
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaa--ccaaaacagttattacaaactacatgg 125  Q
    |||||||||||||||||||| ||||||||||  | |||| ||||||||||||||||||||    
T  7316997 ttttttggtaaatagagataactttcattaaaccaaaaatagttattacaaactacatgg 7317056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 7477752 - 7477800
Alignment:
Q  63 tattgttttttggtaaatagagatatctttcattaaccaaaacagttat 111  Q
    |||| |||||||||||||||||||| |||||||||||||||||| ||||    
T  7477752 tatttttttttggtaaatagagataactttcattaaccaaaacaattat 7477800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25010435 - 25010479
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgc 45  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||    
T  25010435 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgc 25010479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 33162418 - 33162374
Alignment:
Q  22 cattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||||| | |||||||||||||||||||||||||||||||    
T  33162418 cattttcacctttaggtgtaccgcatatatacggcaccttgtatt 33162374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 23859077 - 23859140
Alignment:
Q  3 tcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| ||||||||||| ||||||| || |||||||| ||||||||||||| || |||||||    
T  23859077 tcctcatgtatacggtagtaattttcatctttgggtgtatcgcatatatacggtacattgtatt 23859140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2611362 - 2611297
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||| || || |||||||||  || |||||||||||||||||| |||||||||||    
T  2611362 gttcctcatgtatacagttgtgattttcaccattgtgtgtaccgcatatatacgacaccttgtatt 2611297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 6765773 - 6765716
Alignment:
Q  9 tatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||||||| |||||||||| ||| ||||| || |||||||| |||||||||||    
T  6765773 tatatacggtagtgattttcacctttggatgtacggcttatatacgacaccttgtatt 6765716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7398453 - 7398518
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||| |||||| |||||||||| | |||||| | |||||||| |||||||||||||    
T  7398453 gttcctcatgtatatggtagtgattttcacctttaggtgtatcacatatatatggcaccttgtatt 7398518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36891580 - 36891645
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||| |||||||||| ||| ||||||| ||||||||  ||| |||||||    
T  36891580 gttcctcatgtatacggtagtgattttcacctttggatgtaccgaatatatacaacacattgtatt 36891645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 40357453 - 40357413
Alignment:
Q  14 acggtagtcattttcacctctgggtgtaccgcatatatacg 54  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  40357453 acggtagtcattttcatctcttggtgtaccgcatatatacg 40357413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 23744808 - 23744863
Alignment:
Q  11 tatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||||| ||||| | || | |||||||||||||||| ||||||||||||||    
T  23744808 tatacggtagtgatttttatctttaggtgtaccgcatatatgcggcaccttgtatt 23744863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 3422906 - 3423065
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaa 167  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  3422906 ttttttggtaaatagagataactttcattaaccaaaacagttattacaaactacatggaatcaggaaagactaaaaccaagaaacaagagctaagctcaa 3423005  T
Q  168 acaaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3423006 acaaacaaaaagaacaattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 3423065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 30272735 - 30272892
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaa 167  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30272735 ttttttggtaaataga--tatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaatcaagaaacaagagctaagctcaa 30272832  T
Q  168 acaaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30272833 acaaacaaaaagaactattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 30272892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 43191233 - 43191393
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaa 167  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  43191233 ttttttggtaaatagagataactttcattaaccaaaacaattattacaaactacatggaataaggaaacacttaaaccaagaaacaagagctaagctcaa 43191332  T
Q  168 acaaac-aaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43191333 acaaacaaaaaagaaccattagccttgcacccgaatcatcagagtttgcaccttcttgaat 43191393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 22164286 - 22164212
Alignment:
Q  153 aagagctaagctcaaacaaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22164286 aagagctaagctcaaccaaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 22164212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21582776 - 21582841
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21582776 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 21582841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 54619304 - 54619239
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54619304 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 54619239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34290737 - 34290672
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  34290737 gttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatt 34290672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 47467689 - 47467754
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47467689 gttcctcatgtatacggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatt 47467754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3953997 - 3953932
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  3953997 gttcctcatgtatacggttttcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 3953932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29620489 - 29620424
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  29620489 gttcctcatgtatacggtagtcattttcacctctggatataccgcatatatacggcaccttgtatt 29620424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42098806 - 42098871
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  42098806 gttcctcatgtatacggtagtcattttcacctctgagtataccgcatatatacggcaccttgtatt 42098871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 38681193 - 38681129
Alignment:
Q  2 ttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  38681193 ttcctcatgtatacggtagtcattttcacctctggatgtaccgcatacatacggcaccttgtatt 38681129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 8073439 - 8073374
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||    
T  8073439 gttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacgacaccttgtatt 8073374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 27078666 - 27078605
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  27078666 ctcatgtatacggtagtcattttcacctctgggtataccgcatatatacggcactttgtatt 27078605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 27084463 - 27084402
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  27084463 ctcatgtatacggtagtcattttcacctctgggtataccgcatatatacggcactttgtatt 27084402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44708482 - 44708547
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  44708482 gttcctcatgtatacggtagtcattttcacctttgggtgtaccggatatatacggcaccttatatt 44708547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 53149415 - 53149350
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||    
T  53149415 gttcctcatgtatacggtagtcatttttatctctgagtgtaccgcatatatacggcaccttgtatt 53149350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 579887 - 579831
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatg 124  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  579887 ttttttggtaaatagagataactttcattaaccaaaacaattattacaaactacatg 579831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 36716116 - 36716061
Alignment:
Q  11 tatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  36716116 tatacggtggtcgttttcacctctgggtgtaccgcatatatacggcaccttgtatt 36716061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 36605973 - 36606034
Alignment:
Q  4 cctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  36605973 cctcatgtatacggtagt-attttcatctctgggtgtaccgcatatatacggcaccttgtatt 36606034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37168372 - 37168437
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||||| ||||    
T  37168372 gttcctcatgtatacggtagtcattttcacctttgggtataccacatatatacggcaccttatatt 37168437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 52657150 - 52657207
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatgg 125  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  52657150 ttttttggtaaatagagataaatttcattaaccaaaacaattattacaaactacatgg 52657207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 53506981 - 53506920
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  53506981 ctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatt 53506920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 54407249 - 54407194
Alignment:
Q  11 tatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  54407249 tatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatt 54407194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9878788 - 9878723
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||| || |||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  9878788 gttccttatgtatacgatagtcattttcacctttgggtgtaccgcatatatactgcaccttatatt 9878723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43207338 - 43207274
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| | | |||||||||||||||||||||||| ||||    
T  43207338 gttcctcatgtatacggtagtcattttcacct-ttgatgtaccgcatatatacggcaccttatatt 43207274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 50939334 - 50939269
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||| ||||    
T  50939334 gttcctcatgtatacggtagtcatttttacctttgggtgtaccatatatatacggcaccttatatt 50939269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 13165863 - 13165816
Alignment:
Q  70 ttttggtaaatagagatatctttcattaaccaaaacagttattacaaa 117  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  13165863 ttttggtaaatagagatatatttcattaaccaaaacaattattacaaa 13165816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 18372485 - 18372553
Alignment:
Q  2 ttcctcatatatacggtagtcattttcacctctgggtgtac----cgcatatatacggcaccttgtatt 66  Q
    |||||||| ||||||||||||||||||||||||| ||||||    |||||||||||| |||||||||||    
T  18372485 ttcctcatgtatacggtagtcattttcacctctgtgtgtaccgcgcgcatatatacgacaccttgtatt 18372553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 47361983 - 47361928
Alignment:
Q  68 ttttttggt-aaatagagatatctttcattaaccaaaacagttattacaaactaca 122  Q
    ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||    
T  47361983 ttttttggttaaatagagataactttcattaaccaaaacagtcattacaaactaca 47361928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 52662040 - 52662102
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatca 130  Q
    |||||| |||||||||| ||  ||||||||||||||||| |||||||||||||||||| ||||    
T  52662040 ttttttagtaaatagaggtaaatttcattaaccaaaacaattattacaaactacatggcatca 52662102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8420331 - 8420396
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| ||||||||| ||| |||||||| | |||||||||  ||||||||||||||||||||||    
T  8420331 gttcctcgtatatacggcagtgattttcacatttgggtgtacaacatatatacggcaccttgtatt 8420396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 54574928 - 54574863
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||| |||||| ||||| || | |||||||||||||||||||||| ||||||||||    
T  54574928 gttcctcatgtatatggtagtgatttttacttttgggtgtaccgcatatatacggtaccttgtatt 54574863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 50258725 - 50258659
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacc-tctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||  ||||  |||||||||||||| || |||||||||||||||||||| |||||||||||    
T  50258725 gttcctcatgcatacaatagtcattttcaccctccgggtgtaccgcatatatacgacaccttgtatt 50258659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 28689458 - 28689397
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| ||||||| ||| |||||||||| ||| | || ||||||||||||||||||||||||    
T  28689458 ctcatgtatacggcagtgattttcacctttggatatatcgcatatatacggcaccttgtatt 28689397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32319256 - 32319191
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| |||||| | |||| |||||||||| ||||||||||||||||||||  ||| |||||||    
T  32319256 gttcctcgtatataagatagtaattttcacctttgggtgtaccgcatatatacaacactttgtatt 32319191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48157144 - 48157188
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgc 45  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||||    
T  48157144 gttcctcatgtatacagtagtcattttcacctttgggtgtaccgc 48157188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 68 - 219
Target Start/End: Original strand, 7213109 - 7213260
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaa 167  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7213109 ttttttggtaaatagagatatctttcattaatcaaaacagttattacaaactacatggaatcagaaaacactaacaccaagaaacaagagctaagctcaa 7213208  T
Q  168 acaaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcacct 219  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7213209 acaaacaaaaagaaccattagccttgcacccgaatcatcagagtttgcacct 7213260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13727500 - 13727435
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13727500 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 13727435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21479499 - 21479564
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21479499 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 21479564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 19737793 - 19737728
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19737793 gttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatt 19737728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21280550 - 21280615
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21280550 gttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatt 21280615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 1161891 - 1161834
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatgg 125  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1161891 ttttttggtaaatagagataactttcattaaccaaaacagttattacaaactacatgg 1161834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20711821 - 20711756
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  20711821 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatt 20711756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 24711100 - 24711035
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  24711100 gttcctcatgtatacggtagtcattttcacctctgagtgtaccacatatatacggcaccttgtatt 24711035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 27788789 - 27788724
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  27788789 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatt 27788724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33774122 - 33774187
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  33774122 gttcctcatgtatacggtagtcattttcacatttgggtgtaccgcatatatacggcaccttgtatt 33774187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 35163976 - 35164133
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaa 167  Q
    |||||| | ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||   | || ||||||||| ||||||| || |    
T  35163976 ttttttcgaaaatagagataactttcattaaccaaaacagttattacaaattagatggaatcagaaaccaactatacaaagaaacaaaagctaag-tcta 35164074  T
Q  168 acaaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    |||| ||| || | ||| |||| || ||  |||||||||| |||||||||||| ||||||    
T  35164075 acaaccaagaa-agccactagcttcacaagcgaatcatcaaagtttgcacctttttgaat 35164133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28075788 - 28075853
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||    
T  28075788 gttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacggcaccttatatt 28075853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 1155947 - 1155885
Alignment:
Q  4 cctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  1155947 cctcatgtatacggtagtcattttcacctctggatgtaccgcatatatatgacaccttgtatt 1155885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30832625 - 30832560
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  30832625 gttcctcatgcatacggtagtcattttcatctctgggtgtaccacatatatacggcatcttgtatt 30832560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4036953 - 4037018
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||||||||||||||| || || |||| ||||||||||  |||||||||||||||||||||    
T  4036953 gttcctcatatatacggtagtgatctttacctttgggtgtaccatatatatacggcaccttgtatt 4037018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 27314259 - 27314215
Alignment:
Q  22 cattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  27314259 cattttcacctctgagtgtaccgcatatatacggcaccttgtatt 27314215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17353959 - 17354024
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||| |||| |||||| ||||||||||||| | ||||||||||||||||||||| |||||| ||||    
T  17353959 gttcatcatgtatacgatagtcattttcacatttgggtgtaccgcatatatacgacaccttatatt 17354024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34397862 - 34397927
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| | |||| |||||||||| |||| | ||||||||||||||||||| |||||||||||    
T  34397862 gttcctcatgtttacgatagtcatttttacctttaggtgtaccgcatatatacgtcaccttgtatt 34397927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2477685 - 2477620
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||| |||||||| | | |||||| |||||||||| | |||||||||||    
T  2477685 gttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatt 2477620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6159443 - 6159508
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||| |||||||||||||| |||| ||||| ||  ||||||||||||||||| ||| |||||||    
T  6159443 gttccttatatatacggtagtgatttccacctttgaatgtaccgcatatatacgacacattgtatt 6159508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20611795 - 20611860
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||| |||||||||| ||| |||  || ||||||||| |||||||||||    
T  20611795 gttcctcatgtatacggtagtgattttcacctttggatgtgtcgtatatatacgacaccttgtatt 20611860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21183776 - 21183723
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacg 54  Q
    ||||||||| ||||||||||| ||||||| || |||||||||| ||||||||||    
T  21183776 gttcctcatgtatacggtagtgattttcaactttgggtgtaccacatatatacg 21183723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 235323 - 235275
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatac 53  Q
    ||||| ||||||||||||||||||| || ||||||||| | ||||||||    
T  235323 ctcatgtatacggtagtcattttcatctttgggtgtacggtatatatac 235275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 3660593 - 3660549
Alignment:
Q  75 gtaaatagagatatctttcattaaccaaaacagttattacaaact 119  Q
    |||||||||||||| |||||||||| ||||||  |||||||||||    
T  3660593 gtaaatagagatatatttcattaacaaaaacaaatattacaaact 3660549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 27994775 - 27994819
Alignment:
Q  2 ttcctcatatatacggtagtcattttcacctctgggtgtaccgca 46  Q
    |||||||| ||||||||||| |||||||||| || ||||||||||    
T  27994775 ttcctcatgtatacggtagtgattttcacctttgagtgtaccgca 27994819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 465413 - 465571
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaa 167  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||    
T  465413 ttttttggtaa-tagagataactttcattaaccaaaacaattattacaaactacatgaaatcaggaaatactaaaaccaagaaacaagagctaagctcaa 465511  T
Q  168 acaaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  465512 acaaacaaaaagaaccattagcctcgtacccgaatcatcagagtttgcaccttcttgaat 465571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3155218 - 3155283
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3155218 gttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatt 3155283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4505895 - 4505960
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4505895 gttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatt 4505960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6965008 - 6965073
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6965008 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcactttgtatt 6965073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7162785 - 7162850
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  7162785 gttcctcatatatacggtagtcattttcacctctgagtataccgcatatatacggcaccttgtatt 7162850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9046030 - 9046095
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  9046030 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatt 9046095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24410438 - 24410503
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  24410438 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatt 24410503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29939963 - 29939898
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  29939963 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttgtatt 29939898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3953007 - 3953072
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  3953007 gttcctcatgcatacggtaatcattttcacctctgggtgtaccgcatgtatacggcaccttgtatt 3953072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 8907176 - 8907115
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  8907176 ctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcgccttgtatt 8907115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12337549 - 12337484
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  12337549 gttcctcatgtatacggtagtcattttcacctctgggtgtaccacatatatatgacaccttgtatt 12337484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 26716129 - 26716194
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||    
T  26716129 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatatggcaccttatatt 26716194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10762666 - 10762601
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||||||| ||||    
T  10762666 gttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatataccgcaccttatatt 10762601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 34693991 - 34694041
Alignment:
Q  16 ggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  34693991 ggtagtcattttgacctctgggtgtaccacatatatacggcaccttgtatt 34694041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 34716403 - 34716453
Alignment:
Q  16 ggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  34716403 ggtagtcattttgacctctgggtgtaccacatatatacggcaccttgtatt 34716453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16097009 - 16097074
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||| |||||| |||||||||| |||||||||  ||||||||||||||||||||||    
T  16097009 gttcctcatgtataaggtagtaattttcacctttgggtgtacatcatatatacggcaccttgtatt 16097074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 27506841 - 27506776
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||| ||||||||||| |||| |||||||||| ||||||||||||||||| ||||    
T  27506841 gttcctcatgtatacagtagtcatttttacctttgggtgtaccacatatatacggcaccttatatt 27506776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28425811 - 28425746
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||| |||||| |||||||| | ||||||||| ||||||||||| |||||||||||    
T  28425811 gttcctcatatatatggtagtgattttcacatttgggtgtactgcatatatacgacaccttgtatt 28425746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 5952791 - 5952751
Alignment:
Q  26 ttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5952791 ttcacctctgggtgtaccgcatatatacggcaccttgtatt 5952751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 6840141 - 6840041
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaacc--aaaacagttattacaaactacatggaatcagaaaacactaaaaccaa-gaaacaagagctaagct 164  Q
    |||||||||||||||||||| |||||| ||| |  ||||||||||||||||||||||||| | ||  || ||| | ||| || |||||||||||||||||    
T  6840141 ttttttggtaaatagagataactttcaataaaccaaaaacagttattacaaactacatggcaacaacaaccacaacaacaaaggaaacaagagctaagct 6840042  T
Q  165 c 165  Q
    |    
T  6840041 c 6840041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12134141 - 12134076
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||| || ||||||||||| |||||||| | |||||||| ||||||||||||| ||||||||||    
T  12134141 gttcctaatgtatacggtagtgattttcacttttgggtgtatcgcatatatacggtaccttgtatt 12134076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37182671 - 37182736
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||| |||||||| | ||||||||  ||||||||||| |||||||||||    
T  37182671 gttcctcatgtatacggtagtgattttcacttttgggtgtattgcatatatacgacaccttgtatt 37182736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 24035645 - 24035581
Alignment:
Q  2 ttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||| ||| ||||||| |||||||||| | |||||| ||||| ||||||||||||||||||    
T  24035645 ttcctcatgtatgcggtagtgattttcacctttaggtgtatcgcatttatacggcaccttgtatt 24035581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 40636164 - 40636204
Alignment:
Q  26 ttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  40636164 ttcacctctgggtgtaccgcatatatacgacaccttgtatt 40636204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 38400799 - 38400864
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||| |||||||||| ||  |||| |||||||||| | |||||||||||    
T  38400799 gttcctcatgtatacggtagtgattttcacctttgaatgtatcgcatatatatgacaccttgtatt 38400864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 24474444 - 24474393
Alignment:
Q  69 tttttggtaaatagagatatctttcattaaccaaaacagttattacaaacta 120  Q
    ||||||||||| |||| |||| ||||||||| |||| |||||||||||||||    
T  24474444 tttttggtaaacagagttatcattcattaactaaaatagttattacaaacta 24474393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11912858 - 11912793
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||| || ||||||||||| ||||||| || ||| ||||  ||||||||||||||| |||||||    
T  11912858 gttccttatgtatacggtagtgattttcatctttggatgtattgcatatatacggcactttgtatt 11912793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 22727598 - 22727550
Alignment:
Q  6 tcatatatacggtagtcattttcacctctgggtgtaccgcatatatacg 54  Q
    |||| |||| |||||| |||||||| | |||||||||||||||||||||    
T  22727598 tcatgtatatggtagtgattttcacttttgggtgtaccgcatatatacg 22727550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 69 - 227
Target Start/End: Original strand, 28566357 - 28566515
Alignment:
Q  69 tttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaa 168  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||| |||| ||||||||| || |||||   |||| |||||||||||| ||||||||||    
T  28566357 tttttggtaaatagagataactttcattaaccaacacaattattataaaccacatggaattaggaaacaactaaacaaagaaacaagagttaagctcaaa 28566456  T
Q  169 caaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28566457 caaacaaaaagaaccattagcttcgcacccgaatcatcagagtttgcaccttcttgaat 28566515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 69 - 227
Target Start/End: Original strand, 28560859 - 28561017
Alignment:
Q  69 tttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaa 168  Q
    ||||||||||||||||||| ||||||||||||||  || |||||| |||| | ||||||| || |||||   |||| |||||||||||| ||||||||||    
T  28560859 tttttggtaaatagagataactttcattaaccaacgcaattattataaaccagatggaattaggaaacaactaaacaaagaaacaagagttaagctcaaa 28560958  T
Q  169 caaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28560959 caaacaaaaagaaccattagcttcgcacccgaatcatcagagtttgcaccttcttgaat 28561017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30883331 - 30883396
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30883331 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacattgtatt 30883396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 45475819 - 45475884
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45475819 gttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatt 45475884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2952322 - 2952257
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  2952322 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcactttgtatt 2952257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 5860841 - 5860780
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5860841 ctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 5860780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13534787 - 13534730
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcac 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13534787 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcac 13534730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13624327 - 13624270
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcac 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13624327 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcac 13624270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3048618 - 3048553
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  3048618 gttcctcgtgtatacggtagtcattttcatctctaggtgtaccgcatatatacggcaccttgtatt 3048553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10917393 - 10917458
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  10917393 gttcctcatgtataaggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatt 10917458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23606730 - 23606665
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  23606730 gttcctcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacggcaccttatatt 23606665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23798362 - 23798297
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  23798362 gttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacggcaccttatatt 23798297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37430259 - 37430194
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  37430259 gttcctcatgtatacggtagtcatttttacctctaggtgtaacgcatatatacggcaccttgtatt 37430194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42600784 - 42600849
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||    
T  42600784 gttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatatacggcaccttatatt 42600849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7944623 - 7944558
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||| |||||||||| |||||||||  ||||||||||||||||||||||    
T  7944623 gttcctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacggcaccttgtatt 7944558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 1946065 - 1946122
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatgg 125  Q
    |||||||||||| || |||| |||||||||||||||||| ||||||||||||||||||    
T  1946065 ttttttggtaaagagcgataactttcattaaccaaaacaattattacaaactacatgg 1946122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5942698 - 5942763
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||| ||||||| || ||||||||    
T  5942698 gttcctcatgtatacggtagtgattttcacctttgggtgtaccgcacatatacgacatcttgtatt 5942763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8102914 - 8102979
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||| | |||||||||| | |||||||||||||||||| ||||||||||||    
T  8102914 gttcctcatgtatacggtaatgattttcacctttaggtgtaccgcatatatactgcaccttgtatt 8102979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 41879187 - 41879248
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| ||| |||||||||||||||||| ||| |||||||||||||||||| ||||||||||    
T  41879187 ctcatgtattcggtagtcattttcacctttggatgtaccgcatatatacggtaccttgtatt 41879248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 28573980 - 28574074
Alignment:
Q  69 tttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagc 163  Q
    ||||||||||||||||||| ||||||||||||||  || |||||| |||| | ||||||| || |||||   |||| |||||||||||| |||||    
T  28573980 tttttggtaaatagagataactttcattaaccaacgcaattattataaaccagatggaattaggaaacaactaaacaaagaaacaagagttaagc 28574074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 39332506 - 39332441
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||| |||||||||| ||| |||||||| |||||| | |||||||||||    
T  39332506 gttcctcatgtatacggtagtgattttcacctttggatgtaccgcttatatatgacaccttgtatt 39332441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 28574091 - 28574125
Alignment:
Q  193 gcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    |||||||||||||||||||||||||||||||||||    
T  28574091 gcacccgaatcatcagagtttgcaccttcttgaat 28574125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5721561 - 5721626
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||  ||||||||||| |||||||| | |||||||||||  |||||| |||||||||||||    
T  5721561 gttcctcaggtatacggtagtgattttcacttttgggtgtaccgattatatagggcaccttgtatt 5721626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 11290190 - 11290251
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| ||||||||||| |||||||||| || ||||||  |||||||||| |||||||||||    
T  11290190 ctcatgtatacggtagtgattttcacctttgagtgtacaacatatatacgacaccttgtatt 11290251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25561594 - 25561530
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||| ||| |||||||| | ||||| || ||||||||||||||||||||||||    
T  25561594 gttcctcatgtatacggcagtgattttcacatttgggt-tatcgcatatatacggcaccttgtatt 25561530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 34789959 - 34789898
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| ||||||||||| |||||||||| |||||||||  |||||||||| || ||||||||    
T  34789959 ctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacgacatcttgtatt 34789898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 1982200 - 1982255
Alignment:
Q  68 ttttttgg-taaatagagatatctttcattaaccaaaacagttattacaaactaca 122  Q
    |||||||| |||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  1982200 ttttttggataaatagagataactttcattaatcaaaatagttattataaactaca 1982255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5973208 - 5973143
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| | ||||||||| | ||||||| || |||||||||  |||||||||| |||||||||||    
T  5973208 gttcctcgtgtatacggtaatgattttcatctatgggtgtacaacatatatacgacaccttgtatt 5973143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41677275 - 41677210
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||| ||||| |||||||||| | | |||| |||||||||||| || ||||||||    
T  41677275 gttcctcatgtatacagtagtgattttcacctttagatgtatcgcatatatacgacatcttgtatt 41677210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15167516 - 15167464
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatac 53  Q
    ||||||||| |||||| |||| |||||||| | |||||||| |||||||||||    
T  15167516 gttcctcatgtatacgatagtgattttcacatttgggtgtatcgcatatatac 15167464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 7280573 - 7280414
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaa 167  Q
    |||||| |||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||   || | ||||||||||| ||||||| ||    
T  7280573 tttttttgtaaatggagataacttttattaaccaacacagttattacaaactacatggaatcaggaaacatctaatcaaagaaacaagaactaagcttaa 7280474  T
Q  168 acaaacaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    |||||||||| ||||||||||  ||||||||||| |||  |||||||||| |||||||||    
T  7280473 acaaacaaaaggaaccattagtatcgcacccgaagcattggagtttgcactttcttgaat 7280414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34756464 - 34756399
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34756464 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 34756399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16592172 - 16592107
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  16592172 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccctgtatt 16592107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19523201 - 19523266
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19523201 gttcctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 19523266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 36187973 - 36187912
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36187973 ctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 36187912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 72 - 227
Target Start/End: Original strand, 39044860 - 39045014
Alignment:
Q  72 ttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaacaa 171  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||| |||| ||  ||| ||  |||| | ||||||||||| ||||||||||||    
T  39044860 ttggtaaatggagataactttcattaaccaaaacaattattacaaactacaaggaagcatgaaatacctaaacaatgaaacaagagccaagctcaaacaa 39044959  T
Q  172 acaaaaagaaccattagcctcgcacccgaatcatcagagtttgcaccttcttgaat 227  Q
    | || || | | | ||||||| ||  ||||||| ||||| ||||||||||||||||    
T  39044960 ataagaa-agctactagcctcacaaacgaatcaccagaggttgcaccttcttgaat 39045014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9364293 - 9364358
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  9364293 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatt 9364358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30854331 - 30854396
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30854331 gttcctcatgtatacgatagtcattttcacctctgagtgtaccgcatatatacggcaccttgtatt 30854396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15480187 - 15480122
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  15480187 gttcctcatgcatacggtagtcattttcacctctgggtgtaccgcatatatacgacatcttgtatt 15480122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16799425 - 16799360
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||    
T  16799425 gttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacggcaccttatatt 16799360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23284160 - 23284095
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||    
T  23284160 gttcctcatgtatacggtagtcattttcatctttgggtgtaccgcatatatacgacaccttgtatt 23284095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27079013 - 27079078
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  27079013 gttcctcatgtatacagtagtcattttcacctttaggtgtaccgcatatatacggcaccttgtatt 27079078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28822440 - 28822375
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  28822440 gttcatcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatt 28822375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 31194706 - 31194645
Alignment:
Q  4 cctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  31194706 cctcatgtatacggtagt-attttcacctctgggtttaccgcatatatacggcaccttgtatt 31194645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2274892 - 2274957
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| | |||||||||||||||||||||||||||||||| |||||||||||  ||||||||||    
T  2274892 gttcctcgtgtatacggtagtcattttcacctctgggtgtactgcatatatacgataccttgtatt 2274957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16198892 - 16198827
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||    
T  16198892 gttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacgacaccttatatt 16198827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 22986652 - 22986591
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  22986652 ctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacgacactttgtatt 22986591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27924084 - 27924149
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||    
T  27924084 gttcctcatgtatacggtagtcatttttacctttggatgtaccgcatatatacggcaccttatatt 27924149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 38869457 - 38869396
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  38869457 ctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatt 38869396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40389634 - 40389569
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| |||||| ||||    
T  40389634 gttcctcataaatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatt 40389569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 36874379 - 36874324
Alignment:
Q  70 ttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatgg 125  Q
    |||||||||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  36874379 ttttggtaaatagagaaaactttcattaaccaaaatagttattacaaactacatgg 36874324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 7670929 - 7670991
Alignment:
Q  4 cctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||| |||||||||||||||||||||| ||||||||||| | |||||||||||||| ||||    
T  7670929 cctcatgtatacggtagtcattttcacctttgggtgtaccgtaaatatacggcaccttatatt 7670991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 36868973 - 36868909
Alignment:
Q  2 ttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||| ||||||||||| |||||||| | |||||||||| |||||||||| |||||||||||    
T  36868973 ttcctcatgtatacggtagtgattttcacatttgggtgtaccacatatatacgacaccttgtatt 36868909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41911715 - 41911650
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||||| |||| ||||| || | |||||||||||| |||||||| |||||||||||    
T  41911715 gttcctcatatatacgatagtgatttttacttttgggtgtaccgcttatatacgacaccttgtatt 41911650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 31881528 - 31881467
Alignment:
Q  4 cctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||| ||||||||||| ||||||| |||||| ||| |||||||||||||||||| ||||||    
T  31881528 cctcatgtatacggtagt-attttcatctctggatgttccgcatatatacggcaccgtgtatt 31881467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1366624 - 1366559
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||||||||||||||| |||||||| | | |||||| |||||||||||  || ||||||||    
T  1366624 gttcctcatatatacggtagtgattttcacatttaggtgtatcgcatatataccacatcttgtatt 1366559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 7338021 - 7338066
Alignment:
Q  21 tcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||    
T  7338021 tcattttcacctttaggtgtaccgcatatatacgacaccttgtatt 7338066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 2024738 - 2024675
Alignment:
Q  3 tcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| |||| |||||| ||||||| || |||||||| | |||||||||||||| |||||||    
T  2024738 tcctcatgtatatggtagtgattttcatctttgggtgtatcacatatatacggcacattgtatt 2024675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 13943257 - 13943206
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaaccaaaacagttattacaaact 119  Q
    ||||||||||||||||||||| ||| ||||| ||||| || |||||||||||    
T  13943257 ttttttggtaaatagagatatattttattaatcaaaatagatattacaaact 13943206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 26719045 - 26718982
Alignment:
Q  3 tcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| ||| ||||||| |||||||||| || ||||| |||||||||||| ||| |||||||    
T  26719045 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatt 26718982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 26988789 - 26988726
Alignment:
Q  3 tcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| ||| ||||||| |||||||||| || ||||| |||||||||||| ||| |||||||    
T  26988789 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatt 26988726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 39790064 - 39790122
Alignment:
Q  68 ttttttggtaaatagagatatctttcattaa--ccaaaacagttattacaaactacatg 124  Q
    ||||||| |||||||||||| ||||||||||  | |||||| |||||||||||||||||    
T  39790064 ttttttgataaatagagataactttcattaaaccaaaaacaattattacaaactacatg 39790122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 27179309 - 27179359
Alignment:
Q  80 tagagatatctttcattaaccaaaacagttattacaaactacatggaatca 130  Q
    ||||||||| ||||||||| |||||||| ||||||||||| ||| ||||||    
T  27179309 tagagatatatttcattaatcaaaacagatattacaaacttcatagaatca 27179359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 14318483 - 14318418
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||| |||||||  | ||| |||| | |||||||||| |||||||||||    
T  14318483 gttcctcatgtatacggtagtgattttcatttttggatgtatcacatatatacgacaccttgtatt 14318418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34425905 - 34425970
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||| | ||||| | || | |||||| | ||||||||||||||||||||||    
T  34425905 gttcctcatgtatacggtaatgattttaatctttaggtgtatcacatatatacggcaccttgtatt 34425970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5316693 - 5316758
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5316693 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 5316758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6771804 - 6771869
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6771804 gttcctcgtgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 6771869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14146313 - 14146378
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14146313 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatt 14146378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 23185440 - 23185505
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23185440 gttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatt 23185505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5027562 - 5027627
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5027562 gttcctcatctatatggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatt 5027627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19955730 - 19955795
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  19955730 gttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatt 19955795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44655754 - 44655819
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  44655754 gttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacgacaccttgtatt 44655819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3406431 - 3406496
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  3406431 gttcctcatgtatacggtagtcattttcacctccgagtgtactgcatatatacggcaccttgtatt 3406496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3440389 - 3440324
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  3440389 gttcctcatgtatacggtagtcattttcacctccgagtgtactgcatatatacggcaccttgtatt 3440324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4971718 - 4971653
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  4971718 gttcctcatgtatacggtagtcattttcacttatgggtgtaccgcatatatacggtaccttgtatt 4971653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9173123 - 9173058
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  9173123 gttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatt 9173058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9181105 - 9181040
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  9181105 gttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatt 9181040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27559650 - 27559715
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  27559650 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatt 27559715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 16140069 - 16140133
Alignment:
Q  2 ttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  16140069 ttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacaacaccttgtatt 16140133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 21741027 - 21740972
Alignment:
Q  11 tatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21741027 tatatggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatt 21740972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 19177027 - 19176933
Alignment:
Q  75 gtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaac 169  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||||||||| | ||  || |   ||||| ||||||||||||||||||||||||    
T  19177027 gtaaagagagatatctttcattaaccaaaacaattattataaactacatggcaacaagaatccaaaaaactaagaaacaagagctaagctcaaac 19176933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1366978 - 1366913
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||| | ||||||||||||||||||| || |||||||||||||||||||||||||||| ||||    
T  1366978 gttcctcgtgtatacggtagtcattttcatctttgggtgtaccgcatatatacggcaccttatatt 1366913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 50881443 - 50881508
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||| |||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  50881443 gttcctcatgtatactgtagtcattttcacctctagatgtaccgcatatatacgacaccttgtatt 50881508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 51607540 - 51607485
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggc 56  Q
    ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||    
T  51607540 gttcctcatgtatacggtagtcattttcacgtttgggtgtaccgcatatatacggc 51607485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17168969 - 17169034
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||  |||||| ||||    
T  17168969 gttcctcatgtatatggtagtcattttcacctttgggtgtaccgcatatatacaacaccttatatt 17169034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40501890 - 40501825
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||| |||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||    
T  40501890 gttcttcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacgacaccttatatt 40501825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 35392295 - 35392348
Alignment:
Q  13 tacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||| ||| | |||||||||||||||||||||||||||    
T  35392295 tacggtagtgattttcacctttggatataccgcatatatacggcaccttgtatt 35392348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38547136 - 38547071
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||| | |||| |||||||| | |||||||||| ||||||||||||||||||||||    
T  38547136 gttcctcatgtatatgatagtgattttcacatttgggtgtaccacatatatacggcaccttgtatt 38547071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41697237 - 41697184
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacg 54  Q
    ||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||    
T  41697237 gttcctcatgtatacggtagtcattttcacttctggatgtactgcatatatacg 41697184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 49596888 - 49596959
Alignment:
Q  101 aaaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagagctaagctcaaacaaa 172  Q
    ||||||||||||||||||||||||  || | ||| ||||||||  |||||||||||  ||||||||||||||    
T  49596888 aaaacagttattacaaactacatgacataaaaaaccactaaaataaagaaacaagacataagctcaaacaaa 49596959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27906817 - 27906779
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtg 39  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  27906817 gttcctcatgtatacggtagtcattttcacctctgggtg 27906779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 5533326 - 5533387
Alignment:
Q  2 ttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgt 63  Q
    |||||||| ||||||||||| |||||||||| ||  |||||  |||||||||||||||||||    
T  5533326 ttcctcatgtatacggtagtgattttcacctttgattgtacatcatatatacggcaccttgt 5533387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 6889632 - 6889677
Alignment:
Q  9 tatatacggtagtcattttcacctctgggtgtaccgcatatatacg 54  Q
    ||||||||| | |||||||||||||||| |||||||||||||||||    
T  6889632 tatatacggcaatcattttcacctctggatgtaccgcatatatacg 6889677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 6891478 - 6891523
Alignment:
Q  9 tatatacggtagtcattttcacctctgggtgtaccgcatatatacg 54  Q
    ||||||||| | |||||||||||||||| |||||||||||||||||    
T  6891478 tatatacggcaatcattttcacctctggatgtaccgcatatatacg 6891523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 39134823 - 39134758
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||| ||||| ||| |||||| ||||||||  |||||||||| ||||||||||||    
T  39134823 gttcctcatgtatacagtagtgattatcacctttgggtgtattgcatatatacagcaccttgtatt 39134758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 50715620 - 50715709
Alignment:
Q  69 tttttggtaaatagagatatctttcattaacca-aaacagttattacaaactacatggaatcagaaaacactaaaaccaagaaacaagag 157  Q
    ||||||||||| ||||||| ||| ||||||||| |||||  ||||||||||||||||||| ||  || ||| | ||| ||||||||||||    
T  50715620 tttttggtaaaaagagataacttccattaaccataaacaactattacaaactacatggaaacaagaaccacaacaacaaagaaacaagag 50715709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 8239873 - 8239933
Alignment:
Q  70 ttttggtaaatagagatatctttcattaaccaaaacagttattacaaactacatggaatca 130  Q
    |||| ||||||| ||||| |||||||||| ||||||||| ||||||||||| |||| ||||    
T  8239873 tttttgtaaataaagataactttcattaatcaaaacagtcattacaaactaaatggcatca 8239933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 13913578 - 13913530
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatac 53  Q
    ||||| |||||||||||||||||||| | | ||||||||||||||||||    
T  13913578 ctcatgtatacggtagtcattttcacttttaggtgtaccgcatatatac 13913530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 34247066 - 34247106
Alignment:
Q  14 acggtagtcattttcacctctgggtgtaccgcatatatacg 54  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  34247066 acggtagtcattttcatctcttggtgtaccgcatatatacg 34247106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 44895665 - 44895707
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtacc 43  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||    
T  44895665 gttcctcatgtatacggtaatcattttcacctttgggtgtacc 44895707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6221691 - 6221756
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||||||||||| || | |||||||| | | | |||||||| |||||||||||| |||||||    
T  6221691 gttcctcatatatacgataatgattttcacattttgatgtaccgcttatatacggcacattgtatt 6221756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 33170776 - 33170837
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| ||||||||||| |||||||||  | ||||||||||||||||||  ||| |||||||    
T  33170776 ctcatgtatacggtagtgattttcaccatttggtgtaccgcatatatacaacacattgtatt 33170837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 38853539 - 38853600
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||| ||||||||||| |||||||||| ||| | |||  |||||||||| |||||||||||    
T  38853539 ctcatgtatacggtagtgattttcacctttggatatacaacatatatacgacaccttgtatt 38853600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1345 - 1410
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  1345 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcagcttgtatt 1410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 106540 - 106605
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  106540 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatt 106605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 206590 - 206525
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||| ||||||||||| |||||||||  ||||||||||||||||||||| |||||||||||    
T  206590 gttcctcatgtatacggtagtgattttcaccattgggtgtaccgcatatatacgacaccttgtatt 206525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 359 - 294
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||| |||| ||||||||||| |||||||| | ||||||||||||||||||||| |||||||||||    
T  359 gttcatcatgtatacggtagtgattttcacatttgggtgtaccgcatatatacgacaccttgtatt 294  T

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Target: scaffold0097 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 38927 - 38992
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||||||||||||||| |||||||| | || ||||| |||||||||||| |||||||||||    
T  38927 gttcctcatatatacggtagtgattttcacatttgtgtgtatcgcatatatacgacaccttgtatt 38992  T

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Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 181921 - 181969
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatat 49  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  181921 gttcctcatgtatacggtagtcattttcacctctggatgtaccgcatat 181969  T

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Target: scaffold0002 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 141125 - 141172
Alignment:
Q  70 ttttggtaaatagagatatctttcattaaccaaaacagttattacaaa 117  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  141125 ttttggtaaatagagatatatttcattaaccaaaacaattattacaaa 141172  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 173611 - 173546
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    ||||||||  ||||||||||| ||||| |||| |||||||| ||||||||||||| ||||||||||    
T  173611 gttcctcacgtatacggtagtgatttttacctttgggtgtatcgcatatatacggtaccttgtatt 173546  T

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Target: scaffold0182 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 24083 - 24029
Alignment:
Q  12 atacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatt 66  Q
    |||||||| | |||||||| | ||||||||||||||||||||| |||||||||||    
T  24083 atacggtaatgattttcacttttgggtgtaccgcatatatacgacaccttgtatt 24029  T

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Target: scaffold0227 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 16033 - 16099
Alignment:
Q  5 ctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtattgtttt 71  Q
    ||||| ||||||||||| ||||||| || ||| ||||||||||| ||||| || |||||||| ||||    
T  16033 ctcatgtatacggtagtgattttcatctttggatgtaccgcatacatacgacatcttgtattttttt 16099  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 230960 - 230908
Alignment:
Q  1 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatac 53  Q
    ||||||||| |||| |||||| |||||||||| ||||| || |||||||||||    
T  230960 gttcctcatgtataaggtagtgattttcacctttgggtatatcgcatatatac 230908  T

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