View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9319_low_92 (Length: 219)
Name: NF9319_low_92
Description: NF9319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9319_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 31014516 - 31014707
Alignment:
| Q |
20 |
atcaatgttataggcatttgatgtgcagggacgtacttgaagtttgcgtatattttctgcagtaatagttttgaacataaaatgaaaatgaaaaggtgtt |
119 |
Q |
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| T |
31014516 |
atcaatgttataggcatttgatgtgcagggacgtacttgaagtttgcgtatattttctgcagtaatagttttgaacataaaatgaaaatgaaaaggtgtt |
31014615 |
T |
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| Q |
120 |
gacataagacaatgttattttgcagtgattattgttccctgtaagcattttactttgtcttctgcccatcatcagttcagatgtccatctca |
211 |
Q |
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| T |
31014616 |
gacataagacaatgttattttgcagtgattattgttcccggtatgcattttactttgtcttctgcccatcatcagttcagatgagcatctca |
31014707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 31192770 - 31192964
Alignment:
| Q |
20 |
atcaatgttataggcatttgatgtgcagggacgt---acttgaagtttgcgtatattttctgcagtaatagttttgaacataaaatgaaaatgaaaaggt |
116 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||| |
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| T |
31192770 |
atcaatgttataggcatttgatgtgcagggacgccgcacttgaagtttgcgtaaattttctgcagcaatagttttgaacacaacatgaaaatgaaaaggt |
31192869 |
T |
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| Q |
117 |
gttgacataagacaatgttattttgcagtgattattgttccctgtaagcattttactttgtcttctgcccatcatcagttcagatgtccatctca |
211 |
Q |
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| T |
31192870 |
gttgacaaaagacaatgttattttgcagtgattattgttcccggtatgaattttactttgtcttctgcccatcatcagttcagatgagcatctca |
31192964 |
T |
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